| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,256,482 – 16,256,582 |
| Length | 100 |
| Max. P | 0.717780 |
| Location | 16,256,482 – 16,256,582 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 59.62 |
| Shannon entropy | 0.56339 |
| G+C content | 0.28722 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16256482 100 + 24543557 UGCUGUAAGUACACUUACAGACAUUCUGGGCACUACAAUUUUUUUA--U--GAAUUAUG----AAGUUGUUCUUUUGUUCUUUUGAAACCUUAAGUACUUUUUUUUUU (((((((((....))))))).))(((.(((((..((((((((....--.--.......)----))))))).....)))))....)))..................... ( -16.50, z-score = -0.89, R) >droYak2.chr3L 2263646 107 - 24197627 GCCUGUAAGUACACUUACAGAAAGUGAGGGUAUUACCAUUAUUAAAACUCAAAGCUAUAUCUCGAUUGAAUUUCACAUUUUUUUUAUCCAACACAAAUUAUUAUUCG- ..(((((((....)))))))...((((((((.(((.......))).)))).........((......))...))))...............................- ( -15.00, z-score = -1.36, R) >droSec1.super_0 8350623 92 + 21120651 UGCUGUAAGUACACUUACAGAAAGUCUGGGCACUACAAUUUUUUUU--UAAGAAUUUUG----AA-----CAAUUUCUUCCUCUAAAACCUUACAAAUUUUUU----- ..(((((((....)))))))...((..((.......(((((((...--.)))))))..(----((-----....)))...........))..)).........----- ( -11.90, z-score = -0.34, R) >consensus UGCUGUAAGUACACUUACAGAAAGUCUGGGCACUACAAUUUUUUUA__U_AGAAUUAUG____AA_U___UAUUUUAUUCUUUUAAAACCUUACAAAUUUUUUUU___ ..(((((((....)))))))........................................................................................ ( -8.33 = -8.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:01 2011