| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,247,471 – 16,247,566 |
| Length | 95 |
| Max. P | 0.851738 |
| Location | 16,247,471 – 16,247,566 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 62.50 |
| Shannon entropy | 0.65722 |
| G+C content | 0.38414 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -6.54 |
| Energy contribution | -7.30 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16247471 95 - 24543557 UUAUAAAAU-AUCUUCCUGGAAUUCAACAUACAGUUGGU-----GUUU------------UUAUUCCAUG-AAAAACUGCAAGAGCUACACAUUAC-UUUCUUUAGUUCCAGGAA .........-....((((((((((((((.....))))((-----((((------------((((...)))-)))....((....)).)))).....-.......)))))))))). ( -20.10, z-score = -2.23, R) >droAna3.scaffold_13337 12910762 110 + 23293914 UUAAUAUUUGAUGUCCAGGGAAAUGGCAGUGGUUGGGGCCUGCCAGAUGCUUCUG----GUUAUUCCUCG-AAGGACUCUCUGCGGUGGGGAUAACAUUGCAAGUAUUCUGAGAA .............(((((((.....((((((.((((((...((((((....))))----))....)))))-).....(((((.....)))))...)))))).....))))).)). ( -32.00, z-score = -0.14, R) >droYak2.chr3L 2254579 113 + 24197627 UUGAUAAAU-ACCUUCCAGGAAUUCAAAAUGCAUUUCGUUUGGGAUCUGCUUCUGGUAUAUAAUUCCAAGAAAAAACGGACUGAGGCAAAUUUAAC-UUGCUUCAGUUCUCAAAA ((((...((-(((.....(((.(((.(((((.....))))).))))))......)))))..................((((((((((((.......-)))))))))))))))).. ( -27.50, z-score = -2.45, R) >droSec1.super_0 8341695 108 - 21120651 UUAUUAAAU-AUCUUCCUGGAAUUCAACAUUCAGUUGGUGUGGGGUUUGGCUACUG---GUUAUUCCGUG--AAAACUGCCAGAGCCACACAUUAA-UUUCUUUAGUUCCAGGAG .........-....((((((((((........((((((((((((.((((((....(---(.....))((.--...)).)))))).)).))))))))-)).....)))))))))). ( -38.52, z-score = -4.62, R) >droSim1.chr3L 15582443 108 - 22553184 UUAUUAAAU-AUCUUCCAGGAAUUGAAAACACAGUUGGUGUGGGGUUUGGCUACUG---GUUAUUCCGUG--AAAACUGCCAGAGCCACACAUUAA-UUUCUUUAGUUCCAGGAA .........-....(((.(((((((((.....((((((((((((.((((((....(---(.....))((.--...)).)))))).)).))))))))-))..))))))))).))). ( -37.00, z-score = -3.91, R) >consensus UUAUUAAAU_AUCUUCCAGGAAUUCAAAAUACAGUUGGUGUGGGGUUUGCCUACGG___GUUAUUCCAUG_AAAAACUGCCAGAGCCACACAUUAC_UUUCUUUAGUUCCAGGAA .............((((.((((((.............((((((..........................................)))))).............)))))).)))) ( -6.54 = -7.30 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:31:00 2011