Locus 7655

Sequence ID dm3.chr3L
Location 16,242,138 – 16,242,229
Length 91
Max. P 0.875435
window10536 window10537

overview

Window 6

Location 16,242,138 – 16,242,229
Length 91
Sequences 8
Columns 93
Reading direction forward
Mean pairwise identity 70.90
Shannon entropy 0.58045
G+C content 0.42886
Mean single sequence MFE -21.71
Consensus MFE -9.62
Energy contribution -8.78
Covariance contribution -0.84
Combinations/Pair 1.53
Mean z-score -1.65
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.02
SVM RNA-class probability 0.875435
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16242138 91 + 24543557
-UCCCCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGG-CAAUUCAAUCGUU
-...((((((((((((((.....((.(((..((.((((....)).)).))...))))).......))))))))))))))-............. ( -26.10, z-score =  -3.19, R)
>droSec1.super_0 8336233 91 + 21120651
-UCCCCAUCAAGAUAUCGACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGG-CAAUUCAAUCGUU
-...((((((((((((((((.....))).......(((...((.....))..)))...........)))))))))))))-............. ( -24.80, z-score =  -2.49, R)
>droSim1.chr3L 15577189 91 + 22553184
-UCCCCAUCAAGAUAUCCACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGG-CAAUUCAAUCGUU
-...((((((((((((((.(...((.(((..((.((((....)).)).))...)))))....).).)))))))))))))-............. ( -23.70, z-score =  -2.41, R)
>droYak2.chr3L 2248562 91 - 24197627
-UCCCCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGGGAUAUCUUGAUGG-CAAUUCAAUCGUU
-...((((((((((((((.....((.(((..((.((((....)).)).))...))))).......))))))))))))))-............. ( -26.10, z-score =  -2.63, R)
>droEre2.scaffold_4784 18484903 91 + 25762168
-UCCCCAUCAAGAUAUCUGCACAGCGUCUUGACAACCGAAAACGAGUGGUAACGAAGCAACAGAGGUAUAUCUUGAUGG-CAAUUCAAUCGUU
-...((((((((((((((.....((.((...((.((((....)).)).))...)).))......)).))))))))))))-............. ( -22.40, z-score =  -1.67, R)
>droAna3.scaffold_13337 12905905 89 - 23293914
UCCCGCAUCAAGAUUUCCAGCCAUUUCGCUGCCU-UGACAACCGAAUAGUAACGGGGCGACACA--CAAAUCCUGAUGG-CAAUUCAAUCGGU
..((((((((.(((((..(((......)))((((-((...((......))..))))))......--.))))).))))).-.........))). ( -17.60, z-score =   0.45, R)
>droVir3.scaffold_13049 1215048 85 + 25233164
-UUUCCAUAAACAUUUUAUGGCGUUUGCCUGGCAACGAUUUCCAUCGGGCAAUGUAUGAA-------AAAUAUUGAUGGUUCUUUCAAUCGCU
-...((((.....(((((((.((((.(((((....)(((....)))))))))))))))))-------).......)))).............. ( -15.80, z-score =   0.21, R)
>droGri2.scaffold_15110 2346188 82 + 24565398
-UUUCCAUAAACAUUUUAUGGCGUUUGCUUGGCAACGAUAUCCAUCAG-UAAUACAUGAA-------AAAU--UGAUGGGUUUUUCAAUCGUU
-...((((((.....)))))).(((.....)))(((((((((((((((-(..........-------..))--))))))))......)))))) ( -17.20, z-score =  -1.48, R)
>consensus
_UCCCCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAG_GAUAUCUUGAUGG_CAAUUCAAUCGUU
....((((((((((((.........((.(((....((........).)....))).)).........)))))))))))).............. ( -9.62 =  -8.78 +  -0.84)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 16,242,138 – 16,242,229
Length 91
Sequences 8
Columns 93
Reading direction reverse
Mean pairwise identity 70.90
Shannon entropy 0.58045
G+C content 0.42886
Mean single sequence MFE -23.23
Consensus MFE -10.91
Energy contribution -10.79
Covariance contribution -0.12
Combinations/Pair 1.25
Mean z-score -1.22
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.699372
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16242138 91 - 24543557
AACGAUUGAAUUG-CCAUCAAGAUAUCUCUCUGUUGCUCCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGUAGAUAUCUUGAUGGGGA-
..........((.-((((((((((((((......(((..((((((.((.((....)))).))...))))..))).)))))))))))))).))- ( -25.80, z-score =  -1.70, R)
>droSec1.super_0 8336233 91 - 21120651
AACGAUUGAAUUG-CCAUCAAGAUAUCUCUCUGUUGCUCCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGUCGAUAUCUUGAUGGGGA-
..........((.-(((((((((((((......((((.(((..((.....))...)))..).)))(((.....)))))))))))))))).))- ( -26.80, z-score =  -1.93, R)
>droSim1.chr3L 15577189 91 - 22553184
AACGAUUGAAUUG-CCAUCAAGAUAUCUCUCUGUUGCUCCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGUGGAUAUCUUGAUGGGGA-
..........((.-(((((((((((((..(((...((.(((..((.....))...)))..))..)))(((...)))))))))))))))).))- ( -25.90, z-score =  -1.43, R)
>droYak2.chr3L 2248562 91 + 24197627
AACGAUUGAAUUG-CCAUCAAGAUAUCCCUCUGUUGCUCCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGUAGAUAUCUUGAUGGGGA-
..........((.-(((((((((((((.....((.((...)).))(((.((((((........))))))..)))..))))))))))))).))- ( -24.50, z-score =  -1.26, R)
>droEre2.scaffold_4784 18484903 91 - 25762168
AACGAUUGAAUUG-CCAUCAAGAUAUACCUCUGUUGCUUCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGCAGAUAUCUUGAUGGGGA-
..........((.-(((((((((((....(((((.((.((...((.((.((....)))).))...)).))...)))))))))))))))).))- ( -27.60, z-score =  -2.29, R)
>droAna3.scaffold_13337 12905905 89 + 23293914
ACCGAUUGAAUUG-CCAUCAGGAUUUG--UGUGUCGCCCCGUUACUAUUCGGUUGUCA-AGGCAGCGAAAUGGCUGGAAAUCUUGAUGCGGGA
.(((.........-.((((((((((((--((...))).(((...(((((..(((((..-..)))))..))))).))))))))))))))))).. ( -23.60, z-score =   0.43, R)
>droVir3.scaffold_13049 1215048 85 - 25233164
AGCGAUUGAAAGAACCAUCAAUAUUU-------UUCAUACAUUGCCCGAUGGAAAUCGUUGCCAGGCAAACGCCAUAAAAUGUUUAUGGAAA-
..............((((.(((((((-------(.......(((((((((....))))......))))).......)))))))).))))...- ( -18.44, z-score =  -1.18, R)
>droGri2.scaffold_15110 2346188 82 - 24565398
AACGAUUGAAAAACCCAUCA--AUUU-------UUCAUGUAUUA-CUGAUGGAUAUCGUUGCCAAGCAAACGCCAUAAAAUGUUUAUGGAAA-
...((((((........)))--)))(-------((((((.((..-...((((......((((...))))...)))).....)).))))))).- ( -13.20, z-score =  -0.40, R)
>consensus
AACGAUUGAAUUG_CCAUCAAGAUAUC_CUCUGUUGCUCCGUUACCACUCGUUUUCGGUUGUCAAGACGCUGUGUAGAUAUCUUGAUGGGGA_
..............((((((((((((...................................................)))))))))))).... (-10.91 = -10.79 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:59 2011