| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,239,005 – 16,239,080 |
| Length | 75 |
| Max. P | 0.853720 |
| Location | 16,239,005 – 16,239,080 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Shannon entropy | 0.39405 |
| G+C content | 0.38989 |
| Mean single sequence MFE | -16.35 |
| Consensus MFE | -11.47 |
| Energy contribution | -12.17 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16239005 75 + 24543557 GCGCUUAGAAUAAAUGCUUUGUUUAUUUUAUUUUCGCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGG (((..((((((((((.....))))))))))....)))((((((((((((...))))))..))))))......... ( -18.00, z-score = -2.05, R) >droAna3.scaffold_13337 12902823 58 - 23293914 GCGUUGGAAAUAAAUGUUUUGUUUAUUUUUCGGUUUCUUCUAUGUAGGUCGGACCAGG----------------- .....((((((((((.....)))))))))).(((((..(((....)))..)))))...----------------- ( -10.20, z-score = -0.81, R) >droEre2.scaffold_4784 18481829 75 + 25762168 GCGUUUGGAAUAAAUGUUUUGUUUAUUUUAUUUUUCCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGG ....(((((((((((.....)))))).........((((((((((((((...))))))..)))))).))))))). ( -16.80, z-score = -1.37, R) >droYak2.chr3L 2245544 75 - 24197627 GCGUUUGGAAUAAAUGUUUUGUUUAUUUUAUUUUUCCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGG ....(((((((((((.....)))))).........((((((((((((((...))))))..)))))).))))))). ( -16.80, z-score = -1.37, R) >droSim1.chr3L 15574100 75 + 22553184 GCGCUUGGAAUAAAUGCUUUGUUUAUUUUAUUUUCCCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGG ...((((((((((((.....))))))........((.((((((((((((...))))))..)))))).)))))))) ( -19.20, z-score = -2.08, R) >droSec1.super_0 8333114 75 + 21120651 GCGCUUGGAAUAAAUGCUUUGUUUAUUUUAUUUUCCCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGU ....(((((((((((.....))))))........((.((((((((((((...))))))..)))))).))))))). ( -17.10, z-score = -1.53, R) >consensus GCGCUUGGAAUAAAUGCUUUGUUUAUUUUAUUUUCCCUCUAUUUCGGAUUCCAUCCGACAAAUGGACGGUCCAGG .....((((((((((.....))))))))))....((.((((((((((((...))))))..)))))).))...... (-11.47 = -12.17 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:58 2011