| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,238,509 – 16,238,588 |
| Length | 79 |
| Max. P | 0.854982 |
| Location | 16,238,509 – 16,238,588 |
|---|---|
| Length | 79 |
| Sequences | 3 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 97.47 |
| Shannon entropy | 0.03487 |
| G+C content | 0.51055 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -23.89 |
| Energy contribution | -23.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16238509 79 + 24543557 GAUGAUGGUGAUGAUGGUAAUGGCGGCGGCGACGUCGACAACUGCAUCAUCCGAUUUGUGAAUGAAUGCAGGGCCAAAG .....(((((((((((....((.(((((....))))).))....)))))))...(((((........)))))))))... ( -23.70, z-score = -0.93, R) >droSec1.super_0 8332670 79 + 21120651 GAUGAUGGUGAUGAUGGUAAUGGCGGCGGCGACGUCGACAACUGCAUCAUCCGAUUUGUGAAUGAAAGCAGGGCCAAAG .....(((((((((((....((.(((((....))))).))....)))))))...(((((........)))))))))... ( -23.80, z-score = -1.21, R) >droSim1.chr3L 15573663 79 + 22553184 GAUGAUGGUGAUGAUGGUAAUGUCGGCGGCGACGUCGACAACUGCAUCAUCCGAUUUGUGAAUGAAAGCAGGACCAAAG .....(((((((((((....((((((((....))))))))....)))))))...(((((........)))))))))... ( -28.50, z-score = -3.16, R) >consensus GAUGAUGGUGAUGAUGGUAAUGGCGGCGGCGACGUCGACAACUGCAUCAUCCGAUUUGUGAAUGAAAGCAGGGCCAAAG .....(((((((((((....((.(((((....))))).))....)))))))...(((((........)))))))))... (-23.89 = -23.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:57 2011