| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,202,662 – 16,202,757 |
| Length | 95 |
| Max. P | 0.527249 |
| Location | 16,202,662 – 16,202,757 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 86.55 |
| Shannon entropy | 0.23929 |
| G+C content | 0.49490 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -22.62 |
| Energy contribution | -23.07 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16202662 95 + 24543557 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG---------AGUCUGGGUCCGCUCUCACCUAUA--GCUAUAUGGGUACAUGGCCACAGAC .(((((((((.((((.((((......)))).)))).))))))).))---------.(((((((.(((.....(((((((--....)))))))...))))).))))) ( -35.00, z-score = -2.42, R) >droSim1.chr3L 15536343 95 + 22553184 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG---------AGUCUGGGUCCGCUCUCACCUAUA--GCUAUAUGGGUACAUGGCCACAGAC .(((((((((.((((.((((......)))).)))).))))))).))---------.(((((((.(((.....(((((((--....)))))))...))))).))))) ( -35.00, z-score = -2.42, R) >droSec1.super_0 8297373 95 + 21120651 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG---------AGUCUGGGUCCGCUCUUACCUAUA--GCUAUAUGGGUACAUGGCCACAGAC .(((((((((.((((.((((......)))).)))).))))))).))---------.(((((((.(((....((((((((--....))))))))..))))).))))) ( -36.60, z-score = -3.25, R) >droYak2.chr3L 2208677 97 - 24197627 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG---------AGUCUGGGUCUGCUCUUACCUAUAGAGCUAUAUGGGUACAUGGCAAUAGCC .(((((((((.((((.((((......)))).)))).))))))).))---------......(((.((((..((((((((......))))))))...))))...))) ( -30.70, z-score = -1.56, R) >droEre2.scaffold_4784 18445886 95 + 25762168 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG---------AGUCUGGGUCUGCGCUCACCUAUA--GCUAUAUGGGUACAUGGCUAUAGCC .(((((((((.((((.((((......)))).)))).))))))).))---------....(((((....))))).(((((--(((((........)))))))))).. ( -30.80, z-score = -1.19, R) >droAna3.scaffold_13337 12867177 103 - 23293914 ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCAAUGUCUGCUCUUUUGGGUCCCGGGACCGCUUUUACCU-UA--CCUAUGGCAACCUACGGCUACAGAU ........((((((((((((((.(((((.(((((..(((.....)))....)))((((....)))))).))))).)-))--...))))))....)))))....... ( -25.30, z-score = 0.04, R) >consensus ACAACAUCGCCGUUGUCGUUGAUGUGAAUGUCGAUUGCGAUGUCUG_________AGUCUGGGUCCGCUCUCACCUAUA__GCUAUAUGGGUACAUGGCCACAGAC ...(((((((.((((.((((......)))).)))).)))))))...............(((((.(((.....(((((((......)))))))...))))).))).. (-22.62 = -23.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:52 2011