| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,188,775 – 16,188,868 |
| Length | 93 |
| Max. P | 0.879766 |
| Location | 16,188,775 – 16,188,868 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.23 |
| Shannon entropy | 0.29853 |
| G+C content | 0.53745 |
| Mean single sequence MFE | -27.39 |
| Consensus MFE | -21.31 |
| Energy contribution | -22.03 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16188775 93 + 24543557 --GAAGCGGCAGAAAC-UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGA---AAAGUCGGGUCUUUAUAU-------- --...(.(((......-..))))((((.((((((........))))..((((((((.....))))))))..)).((((---....))))))))......-------- ( -25.50, z-score = -1.51, R) >droSim1.chr3L 15522039 93 + 22553184 --GAAGCGGCAGAAAC-UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGA---AAAGUCGGGUCUUUAUAU-------- --...(.(((......-..))))((((.((((((........))))..((((((((.....))))))))..)).((((---....))))))))......-------- ( -25.50, z-score = -1.51, R) >droSec1.super_0 8283378 93 + 21120651 --GAAGCGGCAGAAAC-UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGA---AAAGUCGGGUCUUUAUAU-------- --...(.(((......-..))))((((.((((((........))))..((((((((.....))))))))..)).((((---....))))))))......-------- ( -25.50, z-score = -1.51, R) >droYak2.chr3L 2192936 93 - 24197627 --GAAGCGGCAGAAAC-UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUCCCAAAGGUGCAACGCCUCGA---AAAGUCGGGUCUUUAUAU-------- --...(.(((......-..))))((((.((((((........))))..((((((((.....))))))))..)).((((---....))))))))......-------- ( -25.50, z-score = -1.98, R) >droEre2.scaffold_4784 18430980 93 + 25762168 --GCAGGGGCAGAAAC-UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGA---AAAGUCGGGUCUUUAUAU-------- --....((((......-..))))((((.((((((........))))..((((((((.....))))))))..)).((((---....))))))))......-------- ( -29.10, z-score = -1.90, R) >droAna3.scaffold_13337 12854548 90 - 23293914 GAGGCGGAGGAGAAAC-CUGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGGCAAAGGUGCAACGCCUCGAC--AGAGUCGGGUAU-------------- (.(((((.(......)-)))))).....((((((........))))..((((((((.....))))))))..))((((((--...))))))...-------------- ( -30.10, z-score = -1.42, R) >dp4.chrXR_group8 1873086 102 + 9212921 -----GGAACAGAAAAGUUGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUGGCCAAAGGUGCAACGCCUUGUGCCUCGACAAAGUCUCUUUCCCGCUGUCU -----(((((......))).)).(((((((((((........))))..((((((((.....))))))))..((.((((......)))).)).........))))))) ( -30.50, z-score = -2.49, R) >consensus __GAAGCGGCAGAAAC_UCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGA___AAAGUCGGGUCUUUAUAU________ ...................((((.(((...((((........))))..((((((((.....))))))))...............)))))))................ (-21.31 = -22.03 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:51 2011