| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,188,326 – 16,188,395 |
| Length | 69 |
| Max. P | 0.889494 |
| Location | 16,188,326 – 16,188,395 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 73.10 |
| Shannon entropy | 0.48376 |
| G+C content | 0.53278 |
| Mean single sequence MFE | -18.46 |
| Consensus MFE | -12.43 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16188326 69 - 24543557 GUGCGACCAACUUGAGUCAGCGGGCCUGUUUUCGCAAGCCCUUGGCAUCUUCUUCUUCCAUAUCAUAAC--- (((.((.......(((((((.((((.(((....))).))))))))).)).......)))))........--- ( -16.44, z-score = -1.26, R) >droSim1.chr3L 15521609 62 - 22553184 -----ACCAACUUGAGUCAGCGGGCCUGUUUUCGCACGCCCUUGGCAUCGUCU--GGCCAUAUCAUAAC--- -----.(((...((((((((.((((.(((....))).))))))))).)))..)--))............--- ( -18.40, z-score = -1.63, R) >droSec1.super_0 8282923 62 - 21120651 -----ACCAACUUGAGUCAGAGGGCCUGUUUUCGCACGCCCUUGGCAUCGUAU--GACCAUAUCAUAAC--- -----........((((((.(((((.(((....))).))))))))).)).(((--((.....)))))..--- ( -17.60, z-score = -2.14, R) >droYak2.chr3L 2192500 67 + 24197627 GAGCGACCAACUUGAGUCAGCGGGCCUGUUUUCGCACGCCCUUGGCAUCGUCU--GGAAAUAUCGUAAC--- ..(((((((...((((((((.((((.(((....))).))))))))).)))..)--)).....))))...--- ( -20.80, z-score = -1.20, R) >droEre2.scaffold_4784 18430535 67 - 25762168 GUGCGACCAACUUGAGUCAGCGGGCCUGUUUUCGCACGCCCUUGGCAUCAUCU--GGCCAUCUCGCAAC--- .((((((((...((((((((.((((.(((....))).))))))))).)))..)--)).....)))))..--- ( -24.50, z-score = -2.25, R) >droAna3.scaffold_13337 12854077 61 + 23293914 ---------AUCUGACUCAGAGGGAAUGUAUUCCAGGGCCCUUGAAGGUGAAG--GCCUACCCCAUAAUAAC ---------.((((...))))(((..((.....))(((((.((......)).)--))))..)))........ ( -13.00, z-score = 0.86, R) >consensus _____ACCAACUUGAGUCAGCGGGCCUGUUUUCGCACGCCCUUGGCAUCGUCU__GGCCAUAUCAUAAC___ ...............(((((.((((.((......)).))))))))).......................... (-12.43 = -12.65 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:50 2011