| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,185,858 – 16,185,939 |
| Length | 81 |
| Max. P | 0.981181 |
| Location | 16,185,858 – 16,185,939 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 99.34 |
| Shannon entropy | 0.01134 |
| G+C content | 0.46091 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.981181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16185858 81 - 24543557 UUUGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.25, R) >droSim1.chr3L 15519041 81 - 22553184 UUCGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.14, R) >droSec1.super_0 8280436 81 - 21120651 UUCGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.14, R) >droYak2.chr3L 2189584 81 + 24197627 UUUGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.25, R) >droEre2.scaffold_4784 18427939 81 - 25762168 UUUGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.25, R) >droAna3.scaffold_13337 12851641 81 + 23293914 UUUGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... ( -22.20, z-score = -2.25, R) >consensus UUUGAAGCGCAUAUCCUGCGUCGUCAUCCUCGCUUAUGCGUAGUUAGUUGUCUGCCGCUUUUGUGGCCUAAGCUUUUAUUU ......(((((((....(((..(....)..))).)))))))....((((....(((((....)))))...))))....... (-22.20 = -22.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:49 2011