| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,170,583 – 16,170,672 |
| Length | 89 |
| Max. P | 0.980550 |
| Location | 16,170,583 – 16,170,672 |
|---|---|
| Length | 89 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 70.72 |
| Shannon entropy | 0.47701 |
| G+C content | 0.62800 |
| Mean single sequence MFE | -35.75 |
| Consensus MFE | -17.15 |
| Energy contribution | -16.90 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16170583 89 + 24543557 GGUGUGCCCACGAUUACAGCUCUCCCCGCCAGACGGCGGCCACUGA-CGAUG--UGGAGAGCAUUCGUGGUGAUGAGGGGAGAGCCGGGAGA ......(((..(....).((((((((((((....)))...((((.(-(((((--(.....))).))))))))....))))))))).)))... ( -37.10, z-score = -1.51, R) >droSec1.super_0 8269855 81 + 21120651 GGUGUGCCCACGAUUACAGCUCUCCCCGCCAGACGGCGGCCACUGA-CGAUG--UGAAGAGCAUUCG--------AGGGGAGAGCCGGGAGA ......(((..(....).((((((((((((....))).........-(((((--(.....))).)))--------.))))))))).)))... ( -31.50, z-score = -1.32, R) >droSim1.chr3L 15506990 89 + 22553184 GGUGUGCCCACGAUUACAGCUCUCCCCGCCAGACGGCGGCCACUGA-CGAUG--UGGAGAGCAUUCGUGGUGGCGAGGGGAGAGCCGGGAGA ......(((..(....).((((((((((((....))).((((((.(-(((((--(.....))).))))))))))..))))))))).)))... ( -44.10, z-score = -2.93, R) >droMoj3.scaffold_6473 8189478 90 + 16943266 AUUGUGACCCCUAUUGU-GUUCCGUGUGGCUGGCAGUG-CCACUGAUCAGCGAUCAUAGAGCUGCCUGGCUGACUCUGACUGAGCCUGGGGU ......(((((......-((((..(((.((((((((..-...))).))))).).))..)))).....((((.(.......).)))).))))) ( -30.30, z-score = -0.41, R) >consensus GGUGUGCCCACGAUUACAGCUCUCCCCGCCAGACGGCGGCCACUGA_CGAUG__UGGAGAGCAUUCGUGGUGACGAGGGGAGAGCCGGGAGA ..................(((((((((((((((..((.......................))..)).)))).....)))))))))....... (-17.15 = -16.90 + -0.25)
| Location | 16,170,583 – 16,170,672 |
|---|---|
| Length | 89 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 70.72 |
| Shannon entropy | 0.47701 |
| G+C content | 0.62800 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -19.23 |
| Energy contribution | -20.60 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16170583 89 - 24543557 UCUCCCGGCUCUCCCCUCAUCACCACGAAUGCUCUCCA--CAUCG-UCAGUGGCCGCCGUCUGGCGGGGAGAGCUGUAAUCGUGGGCACACC .....(((((((((((......((((..(((.......--...))-)..))))..(((....)))))))))))))).....(((....))). ( -34.70, z-score = -1.92, R) >droSec1.super_0 8269855 81 - 21120651 UCUCCCGGCUCUCCCCU--------CGAAUGCUCUUCA--CAUCG-UCAGUGGCCGCCGUCUGGCGGGGAGAGCUGUAAUCGUGGGCACACC .....(((((((((((.--------.(((.....))).--....(-(((((((...))).)))))))))))))))).....(((....))). ( -33.70, z-score = -2.09, R) >droSim1.chr3L 15506990 89 - 22553184 UCUCCCGGCUCUCCCCUCGCCACCACGAAUGCUCUCCA--CAUCG-UCAGUGGCCGCCGUCUGGCGGGGAGAGCUGUAAUCGUGGGCACACC .....(((((((((((..(((((.((((.((.......--)))))-)..))))).(((....)))))))))))))).....(((....))). ( -40.70, z-score = -3.33, R) >droMoj3.scaffold_6473 8189478 90 - 16943266 ACCCCAGGCUCAGUCAGAGUCAGCCAGGCAGCUCUAUGAUCGCUGAUCAGUGG-CACUGCCAGCCACACGGAAC-ACAAUAGGGGUCACAAU (((((.(((((.....)))))..((.((((((.........)))).)).((((-(.......)))))..))...-......)))))...... ( -30.50, z-score = -1.58, R) >consensus UCUCCCGGCUCUCCCCUCGUCACCACGAAUGCUCUCCA__CAUCG_UCAGUGGCCGCCGUCUGGCGGGGAGAGCUGUAAUCGUGGGCACACC .....(((((((((((........................(((......)))((((.....))))))))))))))).....(((....))). (-19.23 = -20.60 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:46 2011