| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,168,325 – 16,168,418 |
| Length | 93 |
| Max. P | 0.579717 |
| Location | 16,168,325 – 16,168,418 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 81.96 |
| Shannon entropy | 0.32763 |
| G+C content | 0.56883 |
| Mean single sequence MFE | -33.16 |
| Consensus MFE | -21.91 |
| Energy contribution | -23.04 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16168325 93 - 24543557 AGCAGUUGAUUGAUGUGGUCUGGCUGCCGGGGAAUAGCCUGGUCGGCUUGAGCCUGGACUUUGGGACUGGACUUGGAAGCUCCGAGUUCGUGU .((.............(((((.(..((((((....((((.....))))....))))).)..).)))))((((((((.....)))))))))).. ( -32.40, z-score = -0.67, R) >droEre2.scaffold_4784 18415182 80 - 25762168 AGCAGUUGAUUGAUGUGGUCUGGCUGACGGGGAAUAGCCUGCUCGGUUUGG-------------GACUGCACUUGGAAGCCCCGACUUUGUGU ...(((((.....((..((((((((((((((......)))).))))))..)-------------)))..))...((....)))))))...... ( -23.50, z-score = 0.12, R) >droYak2.chr3L_random 2696477 83 - 4797643 AGCAGUUGAUUGAUGUGGUCUGGCUGACGGGGAAUAGCCUGGUCGGUUUGGUCUGU----UUGGGACUGCAUUUGGAAGCCCCGAGU------ .((((((..(..(...(..(..((((((.(((.....))).))))))..)..)...----)..)))))))((((((.....))))))------ ( -31.10, z-score = -2.15, R) >droSec1.super_0 8267615 92 - 21120651 AGCAGUUGAUUGAUGUGGUCUGGCUGCCGGGGAAUAGCCUGGUCGGCUUGGGCCUGGAC-UCGGGACUGGACUUGGAAGUCCCGAGUUCGUGU .((.............(((((((((((((((......))))).)))).)))))).((((-((((((((.........)))))))))))))).. ( -43.50, z-score = -3.46, R) >droSim1.chr3L_random 756601 89 - 1049610 AGCAGUUGAUUGAUGU-GUCU-GCUGCCGGGGAAUAGCCUGGUCGGUUUGGGCC-AGUC-CCGAGACUGGACUUGGUAGCCCCGAGUUCGUGU .(((((.(((......-))).-)))))(((((....(((.((((((((((((..-...)-)).))))).)))).)))..)))))......... ( -35.30, z-score = -1.82, R) >consensus AGCAGUUGAUUGAUGUGGUCUGGCUGCCGGGGAAUAGCCUGGUCGGUUUGGGCC_GG_C_UCGGGACUGGACUUGGAAGCCCCGAGUUCGUGU .((((((((((.....)))).))))))(((((.....((.(((((((((.((........)).)))))).))).))...)))))......... (-21.91 = -23.04 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:45 2011