| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,155,662 – 16,155,752 |
| Length | 90 |
| Max. P | 0.534101 |
| Location | 16,155,662 – 16,155,752 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 67.68 |
| Shannon entropy | 0.52173 |
| G+C content | 0.43101 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -15.07 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16155662 90 - 24543557 CUGAG-AAAAAAGCUAAGAACUUCCCAGAAGAGCUUUAUCUUUUCUGCUCUAUCGGAGCCGCAAGGUUCUGGCUUUU--CUUUGGCUCUGGCU-- ..(((-...((((..(((.......((((((((......)))))))).....((((((((....)))))))))))..--))))..))).....-- ( -28.40, z-score = -0.87, R) >droSec1.super_0 8255085 91 - 21120651 CUGAGAAAAAAAGCUAAGAACUUCCCAGAAGAGCUUUAUCUUUUCUGCUCUAUCGGAGCCGCAAGGUUCUGGCUUUU--CUUUGGCUUUGGCU-- .........(((((((((((.....((((((((......)))))))).....((((((((....))))))))...))--).))))))))....-- ( -30.00, z-score = -1.43, R) >droEre2.scaffold_4784 18403037 85 - 25762168 CUAAG-AAAAAAGCUAAGAACUUCCCAGAAGAGCUUUAUCUUUUCUGCUCUAUCGGAGCCGCAAGGUUCUCGCUUUU--CUCUGGCUA------- ...((-(.((((((...........((((((((......)))))))).......((((((....)))))).))))))--.))).....------- ( -26.10, z-score = -1.83, R) >droGri2.scaffold_15110 2265385 94 - 24565398 UUUGGGGGAAUACUUGACCAUUU-CAACAAGUUCUUUGUGUCUGGGGCUCCAAUUCUAGUUUUAAAUGCCACUUUUUGAAUUUGCCUUCCGCUAU ..(((.((((...((((.....)-)))(((((((...(((.((((((((........)))))))...).))).....)))))))..)))).))). ( -16.40, z-score = 0.98, R) >consensus CUGAG_AAAAAAGCUAAGAACUUCCCAGAAGAGCUUUAUCUUUUCUGCUCUAUCGGAGCCGCAAGGUUCUGGCUUUU__CUUUGGCUUUGGCU__ (((((...((((((((.........((((((((......))))))))........(((((....)))))))))))))...))))).......... (-15.07 = -15.70 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:44 2011