| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,155,581 – 16,155,635 |
| Length | 54 |
| Max. P | 0.898918 |
| Location | 16,155,581 – 16,155,635 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 94.01 |
| Shannon entropy | 0.09366 |
| G+C content | 0.48181 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16155581 54 - 24543557 AUUGC--UAUGGCUAUAUGGCUGUGAAGACAAAAGGCCCGGGCCAUGGAGUUUUGA ....(--(((((((....((((.((....))...))))..))))))))........ ( -18.30, z-score = -2.07, R) >droEre2.scaffold_4784 18402948 54 - 25762168 AUGGU--UAUGGCUAUAUGGCUGUGAAGACAAAAGGCCCGGGCCAUGGAGUUUUGA ....(--(((((((....((((.((....))...))))..))))))))........ ( -15.90, z-score = -1.27, R) >droSec1.super_0 8254993 56 - 21120651 AUGGCUAUAUGGCUAUAUGGCUGUGAAGACAAAAGGCCUGGGCCAUGGAGCUUUGA ..((((.(((((((....((((.((....))...))))..))))))).)))).... ( -21.30, z-score = -3.14, R) >droSim1.chr3L 15488935 56 - 22553184 AUGGCUAUAUGGCUAUAUGGCUGUGAAGACAAAAGGCCCGGGCCAUGGAGUUUUGA ..((((.(((((((....((((.((....))...))))..))))))).)))).... ( -18.10, z-score = -1.73, R) >consensus AUGGC__UAUGGCUAUAUGGCUGUGAAGACAAAAGGCCCGGGCCAUGGAGUUUUGA ...(((.(((((((....((((.((....))...))))..))))))).)))..... (-16.33 = -16.45 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:43 2011