| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,154,738 – 16,154,801 |
| Length | 63 |
| Max. P | 0.660315 |
| Location | 16,154,738 – 16,154,801 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 89.21 |
| Shannon entropy | 0.20413 |
| G+C content | 0.41799 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.48 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16154738 63 - 24543557 UUUGACUCACUUGGCCGGCACAUUCCAA-ACAUC-UUAACGGUUGGCCAUUAAAAUGGUCAUUAU ..(((((....((((((((.........-.....-......)))))))).......))))).... ( -14.95, z-score = -2.02, R) >droAna3.scaffold_13337 12827364 63 + 23293914 AUUGACUCACUU--UCUGUACAUUCCAGCACAUCUUUUAUGACUGGCCAUUAAAAGUGGUAGUAG ....((.(((((--(..((.....((((((.(.....).)).))))..))..))))))))..... ( -9.00, z-score = 0.28, R) >droEre2.scaffold_4784 18402117 63 - 25762168 UUUGACUCACUUGGCCGGCACAUUCCGA-ACAUC-UUUACGGCUGGCCAUUAAAAUGGUUAUUAU ..(((((....((((((((.......(.-....)-......)))))))).......))))).... ( -15.42, z-score = -2.14, R) >droYak2.chr3L 2179103 63 + 24197627 UUUGACUCACUUGGCCGGCACAUUCCGA-ACAUC-UUUACGGCUGGCCAUUAAAAUGGUUAUUAU ..(((((....((((((((.......(.-....)-......)))))))).......))))).... ( -15.42, z-score = -2.14, R) >droSec1.super_0 8254114 63 - 21120651 UUUGACUCACUUGGCCGGCACAUUCCGA-ACAUC-UUUACGGCUGGCCAUUAAAAUGGUUAUUAU ..(((((....((((((((.......(.-....)-......)))))))).......))))).... ( -15.42, z-score = -2.14, R) >droSim1.chr3L 15488060 63 - 22553184 UUUGACUCACUUGGCCGGCACAUUCCGA-ACAUC-UUUACGGCUGGCCAUUAAAAUGGUUAUUAU ..(((((....((((((((.......(.-....)-......)))))))).......))))).... ( -15.42, z-score = -2.14, R) >consensus UUUGACUCACUUGGCCGGCACAUUCCGA_ACAUC_UUUACGGCUGGCCAUUAAAAUGGUUAUUAU ..(((((....((((((((......................)))))))).......))))).... (-11.34 = -11.48 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:42 2011