| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,431,457 – 5,431,561 |
| Length | 104 |
| Max. P | 0.877145 |
| Location | 5,431,457 – 5,431,561 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.58 |
| Shannon entropy | 0.44848 |
| G+C content | 0.35704 |
| Mean single sequence MFE | -15.38 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5431457 104 + 23011544 UGCAUUAUGCUUAUGCUUUUAAAGAAUGUCAAGGGUAAUCCGCAUUAUAAAGAAGGUCUUCAAGAUCACGAACCUUCGUUUAAAUGCAACAAUCACCAAUAACC .((((.......)))).......((.(((....((....))(((((.((((((((((..((........)))))))).))))))))).))).)).......... ( -19.20, z-score = -1.31, R) >droEre2.scaffold_4929 5513742 80 + 26641161 -----------------UUUAAAGAAUGUCAAAGGUAAUCCGCAAUAGAAAAAAGGUCUCUAAGAUCAUGAACCUUCGUUUAAAUGCAACAAUAACC------- -----------------.........(((....((....))(((.(.(((..(((((.((.........)))))))..))).).))).)))......------- ( -10.10, z-score = -0.76, R) >droYak2.chr2L 8558117 95 - 22324452 --UGCACUUCUUAUACUUUUAAAGAAUGUCAAAGGUAAGCCGCAUUAGAAGGGAGGUCUACAAGAUCAUGAACCUUCGUUUAAAUGCAACAAUAAGC------- --.(((.(((((.........))))))))....((....))(((((.(((.(((((((...........).)))))).))).)))))..........------- ( -19.30, z-score = -1.13, R) >droSec1.super_5 3505832 86 + 5866729 ---------UGCACUUCUUAAUUUCUUUUCAAGGGUAAUCCGCAUUAUAAAGAAGGUCUCCAAGAUCACGCACCUUCGUUUAAAUGC--CAAUAACC------- ---------........................(((.((..(((((.(((((((((((...........).)))))).)))))))))--..)).)))------- ( -13.40, z-score = -1.06, R) >droSim1.chr2L 5234293 88 + 22036055 ---------UGCAUUUCUUAAUUUCUUGUCAAUGGUAAUCCGCAUUAUAAAGAAGGUCUCCAAGAUCACGAACCUUCGUUUAAAUGCAACAAUAACC------- ---------(((((((......(((((...((((........))))...)))))((((.....))))((((....))))..))))))).........------- ( -14.90, z-score = -1.67, R) >consensus _________CGCAUUCCUUUAAAGAAUGUCAAAGGUAAUCCGCAUUAUAAAGAAGGUCUCCAAGAUCACGAACCUUCGUUUAAAUGCAACAAUAACC_______ .................................((....))(((((..((.(((((((...........).)))))).))..)))))................. (-11.56 = -11.80 + 0.24)
| Location | 5,431,457 – 5,431,561 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.58 |
| Shannon entropy | 0.44848 |
| G+C content | 0.35704 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -11.62 |
| Energy contribution | -12.62 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5431457 104 - 23011544 GGUUAUUGGUGAUUGUUGCAUUUAAACGAAGGUUCGUGAUCUUGAAGACCUUCUUUAUAAUGCGGAUUACCCUUGACAUUCUUUAAAAGCAUAAGCAUAAUGCA .((((..(((((((..((((((((((.(((((((((......)))..)))))))))).)))))))))))))..))))...........((((.......)))). ( -28.70, z-score = -3.04, R) >droEre2.scaffold_4929 5513742 80 - 26641161 -------GGUUAUUGUUGCAUUUAAACGAAGGUUCAUGAUCUUAGAGACCUUUUUUCUAUUGCGGAUUACCUUUGACAUUCUUUAAA----------------- -------(((.....(((((.(..((.(((((((..((....))..))))))).))..).)))))...)))................----------------- ( -13.40, z-score = -0.76, R) >droYak2.chr2L 8558117 95 + 22324452 -------GCUUAUUGUUGCAUUUAAACGAAGGUUCAUGAUCUUGUAGACCUCCCUUCUAAUGCGGCUUACCUUUGACAUUCUUUAAAAGUAUAAGAAGUGCA-- -------((.....((((((((..((.(.((((..((......))..)))).).))..)))))))).........((.(((((.........))))))))).-- ( -18.10, z-score = -0.74, R) >droSec1.super_5 3505832 86 - 5866729 -------GGUUAUUG--GCAUUUAAACGAAGGUGCGUGAUCUUGGAGACCUUCUUUAUAAUGCGGAUUACCCUUGAAAAGAAAUUAAGAAGUGCA--------- -------(((.(((.--(((((((((.((((((.(...........))))))))))).))))).))).)))(((((.......))))).......--------- ( -20.10, z-score = -1.39, R) >droSim1.chr2L 5234293 88 - 22036055 -------GGUUAUUGUUGCAUUUAAACGAAGGUUCGUGAUCUUGGAGACCUUCUUUAUAAUGCGGAUUACCAUUGACAAGAAAUUAAGAAAUGCA--------- -------(((.....(((((((((((.(((((((((......))..))))))))))).)))))))...)))........................--------- ( -18.20, z-score = -1.08, R) >consensus _______GGUUAUUGUUGCAUUUAAACGAAGGUUCGUGAUCUUGGAGACCUUCUUUAUAAUGCGGAUUACCCUUGACAUUCUUUAAAAAAAUAAA_________ .......(((.....(((((((.....(((((((((......))..))))))).....)))))))...)))................................. (-11.62 = -12.62 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:55 2011