| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,148,146 – 16,148,205 |
| Length | 59 |
| Max. P | 0.985936 |
| Location | 16,148,146 – 16,148,205 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Shannon entropy | 0.39039 |
| G+C content | 0.41638 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.47 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16148146 59 + 24543557 UUAGUAUACCAAUCAAUCAAUCAGUCGACCGUCAUCAUUCUGUCAUCGUGAUGGUCACU ......................(((.(((((((((.((......)).)))))))))))) ( -13.10, z-score = -2.78, R) >droAna3.scaffold_13337 12821822 57 - 23293914 UCCUUGAAGGGAUCGAUCAUUC--CCGACCAUAAUCCUGUAACAGCAGCGUCGGGCAUU ((((....)))).........(--(((((.......((((....)))).)))))).... ( -13.30, z-score = -0.39, R) >droEre2.scaffold_4784 18395482 59 + 25762168 UUAGUAUACCAAUCAAUCAAUCAGUCGACCGUCAUCGUUCUGUCAUCGUGAUGGUCACU ......................(((.((((((((.((.........))))))))))))) ( -13.50, z-score = -2.59, R) >droYak2.chr3L 2172594 58 - 24197627 -UUAUAUACCAAUCAAUCAAUCAGUCGACCGUCAUCAUUCUGUCAUUGUGAUGGUCACU -.....................(((.(((((((((.((......)).)))))))))))) ( -13.10, z-score = -2.59, R) >droSec1.super_0 8247717 59 + 21120651 UUAGUAUAGCAAUCAAUCAAUCAGUCGACCGUCAUCAUUCUGUCAUUGUGAUGGUCACU ......................(((.(((((((((.((......)).)))))))))))) ( -13.10, z-score = -2.44, R) >droSim1.chr3L 15481387 59 + 22553184 UUAGUAUACCAAUCAAUCAAUCAGUCGACCGUCAUCAUUCUGUCAUUGUGAUGGUCACU ......................(((.(((((((((.((......)).)))))))))))) ( -13.10, z-score = -2.43, R) >consensus UUAGUAUACCAAUCAAUCAAUCAGUCGACCGUCAUCAUUCUGUCAUUGUGAUGGUCACU ..........................(((((((((.((......)).)))))))))... ( -9.72 = -10.47 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:41 2011