| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,142,565 – 16,142,633 |
| Length | 68 |
| Max. P | 0.942783 |
| Location | 16,142,565 – 16,142,633 |
|---|---|
| Length | 68 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.46628 |
| G+C content | 0.43797 |
| Mean single sequence MFE | -13.27 |
| Consensus MFE | -9.95 |
| Energy contribution | -10.48 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16142565 68 + 24543557 UAUUUUGUAUUCCGUAGAUACCGAUACC---GACCCGCACGUAUUUCAAUCCGUAUCUACAAGGUGCGCAC ......(((((..((((((((.(((...---.((......))......))).))))))))..))))).... ( -14.80, z-score = -1.69, R) >droEre2.scaffold_4784 18390171 64 + 25762168 UAUUUUGUAUUCCGUAGAUACCGAUACC-------CGCACGUAUUCCAAUCCGUAUCUACAAGGUGCGCGC ......(((((..((((((((.(((...-------.............))).))))))))..))))).... ( -14.39, z-score = -1.59, R) >droYak2.chr3L 2167086 64 - 24197627 UAUUUUGUAUUUCGUAGAUACCGAUACC-------CGCACGUAUUUCAGUCCGUAUCUACAAGGUGCGCGU ......((((((.((((((((.(((...-------.............))).)))))))).)))))).... ( -16.09, z-score = -2.02, R) >droSec1.super_0 8242267 71 + 21120651 UAUUUUGUAUUCCGUAGAUACCGAUACCACCGACCCGCACGUAUUUCAAUCCGUAUCUACAAGGUGCGCAC ......(((((..((((((((.(((.......((......))......))).))))))))..))))).... ( -15.02, z-score = -1.86, R) >droSim1.chr3L 15475894 71 + 22553184 UAUUUUGUAUUCCGUAGAUACCGAUACCACCGACCCGCACGUAUUUCAAUCCGUAUCUACAAGGUGCGCGC ......(((((..((((((((.(((.......((......))......))).))))))))..))))).... ( -15.02, z-score = -1.33, R) >droVir3.scaffold_13049 1112666 59 + 25233164 -----UGCUUUCCAUUGUAUCAGCUAAA-------AAUACAAACAUAAACGUCUAGAUAUAGAGUACACAC -----.........((((((........-------.))))))......((.((((....))))))...... ( -4.30, z-score = 0.26, R) >consensus UAUUUUGUAUUCCGUAGAUACCGAUACC_______CGCACGUAUUUCAAUCCGUAUCUACAAGGUGCGCAC .....((((((..((((((((.(((.......................))).))))))))..))))))... ( -9.95 = -10.48 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:37 2011