| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,136,796 – 16,136,887 |
| Length | 91 |
| Max. P | 0.607153 |
| Location | 16,136,796 – 16,136,887 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 58.12 |
| Shannon entropy | 0.69060 |
| G+C content | 0.37742 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -5.74 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16136796 91 - 24543557 ---------------------CAA---UGCCUAGUAAGAAGAGUAAAAAUGUACUCAAUCGAAAGAAACCUGUAAAACUAAGUCUGGCCGAGUUUCACAAUCAGCUGGAUGAAAU--- ---------------------...---....((((.....(((((......)))))..((....))..........)))).(((..((.((.........)).))..))).....--- ( -17.90, z-score = -1.72, R) >droSim1.chr3L 15470103 91 - 22553184 ---------------------CAA---UGUCUAGAAUGAAGAGUAAAAAAGCAGUCAAUCAAAAGAAACCUGUAAAACUAAGUCUGGCCGAGUUUCACAAUCAGCUGGAUAAAAU--- ---------------------...---(((((((..(((...((......))..................(((.(((((..(.....)..))))).))).))).)))))))....--- ( -12.90, z-score = -0.28, R) >droYak2.chr3L 2161362 115 + 24197627 CAAUGACUGAAAAUAAGAGUACAAACUUACUCAAUCAGAAAAAUAAAGCUAUCACCGCUCGAAAGAUACCAUUAAAACUAAGUCUGGCCGAUUUCCACAAUCAGCUGGAUAAUAU--- .((((.((((......(((((......)))))..))))....................((....))...))))........(((..((.((((.....)))).))..))).....--- ( -20.00, z-score = -2.23, R) >droEre2.scaffold_4784 18384485 115 - 25762168 CAAUGACUGGAAAGAAGAGUACAAACUCACUCAAUCUGGAAAAAAAAGCGAUCAACGCUGGAAAAAAACCCACAAAACUAAGUCUAGCCGAUUUCCACAGUCAACUGGACAAAAU--- ...((((((.......((((....))))........((((((....((((.....))))((........))....................))))))))))))............--- ( -22.70, z-score = -2.28, R) >droAna3.scaffold_13337 12812665 97 + 23293914 ---------------------CAAUGCACGGAAGUAAGAAUAGCAAACAAAACAAAUCAGCAAAGAAGCCCGUGAAGCUGAGCCUCGCCAGUUUCCACAAUCUGUUUGAAACUAAAAC ---------------------......((....))........((((((..........((......))..(((((((((.((...)))))))).)))....)))))).......... ( -18.40, z-score = -1.24, R) >consensus _____________________CAA___UACCCAGUAAGAAAAGUAAAAAAAUCAACACUCGAAAGAAACCCGUAAAACUAAGUCUGGCCGAUUUCCACAAUCAGCUGGAUAAAAU___ .................................................................................(((((((.((((.....)))).)))))))........ ( -5.74 = -6.70 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:36 2011