| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,083,929 – 16,083,989 |
| Length | 60 |
| Max. P | 0.568091 |
| Location | 16,083,929 – 16,083,989 |
|---|---|
| Length | 60 |
| Sequences | 11 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Shannon entropy | 0.44088 |
| G+C content | 0.56543 |
| Mean single sequence MFE | -15.46 |
| Consensus MFE | -8.00 |
| Energy contribution | -7.78 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568091 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 16083929 60 - 24543557 UGUAGCUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ....((((..((.....))((((((......))))))...))))(((......))).... ( -18.90, z-score = -1.77, R) >droSim1.chr3L 15423939 60 - 22553184 UGUAGCUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ....((((..((.....))((((((......))))))...))))(((......))).... ( -18.90, z-score = -1.77, R) >droSec1.super_0 8183565 60 - 21120651 UAUAGCUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ....((((..((.....))((((((......))))))...))))(((......))).... ( -18.90, z-score = -2.17, R) >droYak2.chr3L 18649595 60 - 24197627 UGUAGUUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ((.((..(((....(((((((((((......)))))).....))))))))..)).))... ( -17.60, z-score = -1.56, R) >droEre2.scaffold_4784 18331201 60 - 25762168 UGUAGCUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ....((((..((.....))((((((......))))))...))))(((......))).... ( -18.90, z-score = -1.77, R) >droAna3.scaffold_13337 6758783 59 + 23293914 UGUAGUUGUUGCCCUCGGCGGCCGCCUCUCGACUGCCCUUCAGCGGAAACUUCUCCAUU- .......((((.....(((((.((.....)).)))))...))))(((......)))...- ( -13.50, z-score = 0.22, R) >dp4.chrXR_group6 11566124 60 + 13314419 UGUAGCUGUUUCCCUCUGCCGCAGCCUCCCUGCUGCCCUUCAGUGGAAACUUUUCCAUUA .......((((((..(((..(((((......)))))....))).)))))).......... ( -17.30, z-score = -3.74, R) >droPer1.super_9 3595832 60 + 3637205 UGUAGCUGUUUCCCUCUGCCGCAGCCUCCCUGCUGCCCUUCAGUGGAAACUUUUCCAUUA .......((((((..(((..(((((......)))))....))).)))))).......... ( -17.30, z-score = -3.74, R) >droWil1.scaffold_181024 897532 60 - 1751709 UAUAGCUAUUACCCUCUGCAGCAGCCUCUCUGCUUCCUUUUAAUGGGAAUUUUUCCAUUC ....((...........))(((((.....))))).......(((((((....))))))). ( -9.90, z-score = -0.76, R) >droMoj3.scaffold_6680 7082870 60 - 24764193 UAUAGUUGUUGCCUUCCGCUGCAGCCUCUCUGCUACCUUUUAAUGGAAAUUUGUCCAUUU ....(((((.((.....)).)))))................((((((......)))))). ( -10.80, z-score = -1.53, R) >anoGam1.chr2L 19937233 51 - 48795086 ------UGUUG-CUGCUGCUGAUG--UUGCCGGUGCCUUUCAGGGGAAACUUUUCCAUAC ------.(((.-...((.((((..--..((....))...)))).)).))).......... ( -8.10, z-score = 1.49, R) >consensus UGUAGCUGUUGCCCUCCGCGGCGGCCUCCCUGCUGCCCUUCAGCGGAAACUUCUCCAUCC ....((((.........((.((((.....)))).))....))))(((......))).... ( -8.00 = -7.78 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:34 2011