| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,051,416 – 16,051,472 |
| Length | 56 |
| Max. P | 0.662098 |
| Location | 16,051,416 – 16,051,472 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 83.91 |
| Shannon entropy | 0.29025 |
| G+C content | 0.36450 |
| Mean single sequence MFE | -11.15 |
| Consensus MFE | -6.81 |
| Energy contribution | -7.20 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16051416 56 - 24543557 ACAUAUUUUUUCC-----GCCGAACUAUUUCUAAACUCAUGUCGUCAUGGGUUGGCAAAAA .............-----((((((....)))..((((((((....)))))))))))..... ( -13.60, z-score = -2.98, R) >droSim1.chr3L 15390017 56 - 22553184 ACAUAUUUUUCCC-----GCCGAACUAUUUCUAAACUCAUGUCGUCAUGGCUUGGCAAAAA .............-----(((((.((((..(...((....)).)..)))).)))))..... ( -8.60, z-score = -1.20, R) >droSec1.super_0 8151508 56 - 21120651 ACAUAUAUUUUCC-----GCCGAACUAUUUCUAAACUCAUGUCGUCAUGGCUUGGCAAAAA .............-----(((((.((((..(...((....)).)..)))).)))))..... ( -8.60, z-score = -1.31, R) >droYak2.chr3L 18613501 55 - 24197627 ACAUA-UUUUUCC-----GCCGAACUAUUUCUGAACUCAUGUCGUCAUGGGUUGGCAAAAA .....-.......-----((((((....)))..((((((((....)))))))))))..... ( -13.70, z-score = -2.35, R) >droEre2.scaffold_4784 18297632 55 - 25762168 ACAUA-UUUUUCC-----GCCGAACUAUUUCUAAACUCAUGUCGUCAUGGGUUGGCAAAAA .....-.......-----((((((....)))..((((((((....)))))))))))..... ( -13.60, z-score = -2.98, R) >droGri2.scaffold_15110 5007493 61 - 24565398 AUAUUUUUUUUCUAUUUGAUUCAACUAUUUUUGUGUGUAUUUCGUCAUAGGUUGGCGAAAA .......................................((((((((.....)))))))). ( -8.80, z-score = -1.52, R) >consensus ACAUAUUUUUUCC_____GCCGAACUAUUUCUAAACUCAUGUCGUCAUGGGUUGGCAAAAA ..................((((((....)))..((((((((....)))))))))))..... ( -6.81 = -7.20 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:29 2011