Locus 7625

Sequence ID dm3.chr3L
Location 16,011,815 – 16,011,923
Length 108
Max. P 0.873122
window10496

overview

Window 6

Location 16,011,815 – 16,011,923
Length 108
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 87.58
Shannon entropy 0.19339
G+C content 0.46675
Mean single sequence MFE -32.38
Consensus MFE -24.78
Energy contribution -24.34
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -2.21
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.01
SVM RNA-class probability 0.873122
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 16011815 108 - 24543557
GUCUUUCUCGGGGAUUUGGACUGGGAUUGGA------AUUGGGAUCGGGAGUGCGACUGAAACUGGGUCUGGAUUACUCUUUCGAAAGUUUCGUGUAAUUAUGAUUGCGCGAUU
..(((((..(((((((..((((.((.((...------...))..((((........))))..)).))))..)))).)))....)))))..(((((((((....))))))))).. ( -27.80, z-score =  -0.43, R)
>droSim1.chr3L 15349757 102 - 22553184
GUCUUUCUUUGGGAUUGGGACUGGGAU------------CGGGAUCGGGACUGCGACUGAAACUGGGUCUGGAUUACUCUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUU
(((((((...((((.(((..(..((..------------(((..((((........))))..)))..))..).))).))))..)))))))(((((((((....))))))))).. ( -31.70, z-score =  -2.53, R)
>droSec1.super_0 8112573 102 - 21120651
GUCUUUCUCUGGGAUUGGGAUUGUGAU------------CGGGAUCGGGACUGCGACUGAAACUGGGUCUGGAUUACUUUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUU
(((((((((...))..(..(..(((((------------(.(((((.((.............)).))))).))))))..)..))))))))(((((((((....))))))))).. ( -31.82, z-score =  -2.76, R)
>droEre2.scaffold_4784 18256640 114 - 25762168
GUCUUUCUCCGGGAUUGGGAUUGGGAUUGGGACUGGUACUGGGAUCGGGACUGGGACUGAAACUGGGUCUGGAUUACUUUUUCGGAAGAUUCGUGUAAUUAUGAUUGCGCGAUU
((((((((((((..(..(..(..(..(..(..(((((......)))))..)..)..)..)..)..)..)))))..........)))))))(((((((((....))))))))).. ( -38.20, z-score =  -3.14, R)
>consensus
GUCUUUCUCUGGGAUUGGGACUGGGAU____________CGGGAUCGGGACUGCGACUGAAACUGGGUCUGGAUUACUCUUUCGAAAGAUUCGUGUAAUUAUGAUUGCGCGAUU
(((((((.....((((.(((((.................(((..((((........))))..)))))))).))))........)))))))(((((((((....))))))))).. (-24.78 = -24.34 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:25 2011