| Sequence ID | dm3.chr3L |
|---|---|
| Location | 16,010,954 – 16,011,011 |
| Length | 57 |
| Max. P | 0.990681 |
| Location | 16,010,954 – 16,011,011 |
|---|---|
| Length | 57 |
| Sequences | 12 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.05375 |
| G+C content | 0.27232 |
| Mean single sequence MFE | -7.44 |
| Consensus MFE | -6.30 |
| Energy contribution | -6.38 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16010954 57 + 24543557 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU (((((((((......................)))))))))................. ( -7.95, z-score = -2.10, R) >droSim1.chr3L 15348919 57 + 22553184 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU (((((((((......................)))))))))................. ( -7.95, z-score = -2.10, R) >droSec1.super_0 8111730 57 + 21120651 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU (((((((((......................)))))))))................. ( -7.95, z-score = -2.10, R) >droYak2.chr3L_random 3151184 57 - 4797643 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU (((((((((......................)))))))))................. ( -7.95, z-score = -2.10, R) >droEre2.scaffold_4784 18255654 56 + 25762168 UCAGGUA-GCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU (((((((-(.......................))))))))................. ( -7.10, z-score = -1.75, R) >droAna3.scaffold_13337 6687494 57 - 23293914 GCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU .((((((((......................)))))))).................. ( -6.55, z-score = -1.14, R) >dp4.chrXR_group8 4255465 57 + 9212921 CCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU .((((((((......................)))))))).................. ( -6.65, z-score = -1.35, R) >droPer1.super_29 488471 57 + 1099123 CCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU .((((((((......................)))))))).................. ( -6.65, z-score = -1.35, R) >droWil1.scaffold_181024 769909 57 + 1751709 CCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU .((((((((......................)))))))).................. ( -6.65, z-score = -1.35, R) >droVir3.scaffold_13049 9195853 57 + 25233164 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUACGCU (((((((((......................)))))))))................. ( -7.95, z-score = -2.39, R) >droMoj3.scaffold_6680 18614482 57 - 24764193 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUACGCU (((((((((......................)))))))))................. ( -7.95, z-score = -2.39, R) >droGri2.scaffold_15110 4967086 57 + 24565398 UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUACGUU (((((((((......................)))))))))................. ( -7.95, z-score = -2.18, R) >consensus UCAGGUAAGCGACAAUUAUUUAUCUUACAAAUUUACCUGAAAUUAAAUACUUUCGUU .((((((((......................)))))))).................. ( -6.30 = -6.38 + 0.08)
| Location | 16,010,954 – 16,011,011 |
|---|---|
| Length | 57 |
| Sequences | 12 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.05375 |
| G+C content | 0.27232 |
| Mean single sequence MFE | -11.19 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.08 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.40 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.990681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 16010954 57 - 24543557 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.80, z-score = -2.77, R) >droSim1.chr3L 15348919 57 - 22553184 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.80, z-score = -2.77, R) >droSec1.super_0 8111730 57 - 21120651 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.80, z-score = -2.77, R) >droYak2.chr3L_random 3151184 57 + 4797643 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.80, z-score = -2.77, R) >droEre2.scaffold_4784 18255654 56 - 25762168 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGC-UACCUGA .((....))........(((((((.........(((((....)))))..-))))))) ( -10.60, z-score = -2.32, R) >droAna3.scaffold_13337 6687494 57 + 23293914 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGC .((....)).........(((((((....((..(((((....)))))))))))))). ( -10.20, z-score = -1.98, R) >dp4.chrXR_group8 4255465 57 - 9212921 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGG .((....)).........(((((((....((..(((((....)))))))))))))). ( -11.10, z-score = -2.34, R) >droPer1.super_29 488471 57 - 1099123 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGG .((....)).........(((((((....((..(((((....)))))))))))))). ( -11.10, z-score = -2.34, R) >droWil1.scaffold_181024 769909 57 - 1751709 AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGG .((....)).........(((((((....((..(((((....)))))))))))))). ( -11.10, z-score = -2.34, R) >droVir3.scaffold_13049 9195853 57 - 25233164 AGCGUAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.10, z-score = -2.09, R) >droMoj3.scaffold_6680 18614482 57 + 24764193 AGCGUAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -11.10, z-score = -2.09, R) >droGri2.scaffold_15110 4967086 57 - 24565398 AACGUAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) ( -10.80, z-score = -2.26, R) >consensus AACGAAAGUAUUUAAUUUCAGGUAAAUUUGUAAGAUAAAUAAUUGUCGCUUACCUGA .((....))........((((((((....((..(((((....))))))))))))))) (-11.22 = -11.08 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:24 2011