| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,997,215 – 15,997,306 |
| Length | 91 |
| Max. P | 0.838275 |
| Location | 15,997,215 – 15,997,306 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 63.90 |
| Shannon entropy | 0.70225 |
| G+C content | 0.32859 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -3.26 |
| Energy contribution | -2.96 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15997215 91 + 24543557 GAUAUGGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGUAUAUAUGGUAAGUGUCGUGCAGUAUAUAUGU-CGUACAUAUAUAAUACAUC (((((((.(((((((....))))))))))))))......((((((((.....)))).))))..((((((((.-....))))))))....... ( -24.50, z-score = -1.90, R) >droMoj3.scaffold_6680 12059697 81 - 24764193 ----CACACAUUUUCCUUAGAAAACUUCAUGUUUUCUUUAUAUAGAAACAACACACAUUUAUAUACACAUAUGCAUGCAUGCAUG------- ----..............(((((((.....))))))).((((((((...........))))))))....((((((....))))))------- ( -11.70, z-score = -2.66, R) >droVir3.scaffold_13049 14595842 72 + 25233164 ----CACACAUUUUCCUUAGAAAACUUCAUGUUUUCUUUAUAUAGAAAC-----ACAUUUAUAUACGCAUAUGCAUGUAUG----------- ----...((((.......(((((((.....))))))).((((((((...-----...)))))))).((....))))))...----------- ( -11.10, z-score = -2.75, R) >droGri2.scaffold_15110 8928546 82 - 24565398 --------CAUUCGC-UUAGAAAACUUCAUGUUUUCUUUGCACAAAUGCA-CAUACCUAUGUAUAUAAAAACACACACAUGCAUAUAUACAU --------.....((-..(((((((.....)))))))..)).........-.......(((((((((................))))))))) ( -15.39, z-score = -3.48, R) >droEre2.scaffold_4784 18241421 88 + 25762168 GAUAUGGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGCAUAUAUGGUAAGUGUCAUGUAGUAUAUAUGC-CAUACAUAUAUA---CAUU (((((((.(((((((....)))))))))))))).........(((((((......)))))))(((((((((.-....))))))))---)... ( -28.20, z-score = -3.59, R) >droYak2.chr3L_random 3137407 88 - 4797643 GAUAUUGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGCAUAUAUGGUAAGUGUCAUGUUGUAUAUAUGC-CAUACAUAUGUA---CAUU ((((((..(((((((....)))))))((((((...........))))))..))))))....((((((((((.-....))))))))---)).. ( -24.40, z-score = -2.27, R) >droSec1.super_0 8098202 88 + 21120651 GAUAUGGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGCAUAUAUGGUAAGUGUCGUGCUGUAUAUAUGC-CGUACAUAUAUA---CAUC (((((((.(((((((....))))))))))))))......((((((((.....)))).))))((((((((((.-....))))))))---)).. ( -29.20, z-score = -3.15, R) >droSim1.chr3L 15334555 88 + 22553184 GAUAUGGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGCAUAUAUGGUAAGUGUCGUGCAGUAUAUAUGC-CGUACAUAUAUA---CAUC (((((((.(((((((....))))))))))))))......((((((((.....)))).)))).(((((((((.-....))))))))---)... ( -29.30, z-score = -3.32, R) >consensus GAUAUGGCAAUUAUCGCGAGAUGAUUCCAUGUUUUCUUCGCAUAUAUGGUAAGUGUCGUGCUGUAUAUAUGC_CAUACAUAUAUA___CAUC ..........(((((....))))).................................................................... ( -3.26 = -2.96 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:23 2011