| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,981,288 – 15,981,396 |
| Length | 108 |
| Max. P | 0.508977 |
| Location | 15,981,288 – 15,981,396 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Shannon entropy | 0.04702 |
| G+C content | 0.46481 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -22.54 |
| Energy contribution | -22.38 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15981288 108 + 24543557 AUACCAAACAAGUUGCGAAAUUCCCCGCGAUAGUGUUGGAAGUCGCACCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCUUCUAGUCCUCCGAAA .(((....(((((((((........)))(((((..(((((.((........)).)))))..)))))))))))....)))............................. ( -22.50, z-score = -1.36, R) >droEre2.scaffold_4784 18225614 108 + 25762168 AUACCACACAAGUUGCGAAAUUCCCCGCGAUAGUGUUGGAAGUCGUGCCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCCUGUAGUCCUCCGAAA .(((....(((((((((........)))(((((..(((((.((.(.....))).)))))..)))))))))))....)))............................. ( -22.60, z-score = -0.56, R) >droYak2.chr3L_random 2595306 108 + 4797643 AUACCACACAAGUUGCGAAAUUCCCCGCGAUAGUGUUGGAAGUCGCGCCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCUUGUAGUCCUCCGAAA .......((((((.((((..((((.(((....)))..)))).))))..........((((((.........)))))).............))))))............ ( -23.00, z-score = -0.53, R) >droSec1.super_0 8081534 108 + 21120651 AUACCAAACAAGUUGCGAAAUUCCCCGCGGUAGUGUUGGAAGUCGUGCCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCUUCUAGUCCUCCGAAA ..............(((........)))((.((..((((((((.((..........((((((.........))))))..........)).))))))))..)))).... ( -24.25, z-score = -1.02, R) >droSim1.chr3L 15318859 108 + 22553184 AUACCAAACAAGUUGCGAAAUUCCCCGCGAUAGUGUUGGAAGUCGCGCCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCUUCUAGUCCUCCGAAA .(((....(((((((((........)))(((((..(((((.((........)).)))))..)))))))))))....)))............................. ( -22.50, z-score = -0.99, R) >consensus AUACCAAACAAGUUGCGAAAUUCCCCGCGAUAGUGUUGGAAGUCGCGCCACACAUUCAGUGCUAUCAGCUUGCAUUGUACCACCAAAAUUGCUUCUAGUCCUCCGAAA .(((....(((((((((........)))(((((..(((((.((........)).)))))..)))))))))))....)))............................. (-22.54 = -22.38 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:21 2011