| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,960,767 – 15,960,866 |
| Length | 99 |
| Max. P | 0.704209 |
| Location | 15,960,767 – 15,960,866 |
|---|---|
| Length | 99 |
| Sequences | 14 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 67.87 |
| Shannon entropy | 0.69871 |
| G+C content | 0.48720 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -10.31 |
| Energy contribution | -10.18 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15960767 99 - 24543557 ACAACUAAACAGACAUGGCGGAUGCCGCAGCACGUCAGCUGCAAUACGAGUACAAGGCGGUAAGUGUCAAAUCCC-GCCCGGGAAAACUUCUCCCACUCC----------- ................(((....)))(((((......))))).....((((....(((((.............))-))).((((.......)))))))).----------- ( -29.92, z-score = -1.71, R) >droSim1.chr3L 15298341 99 - 22553184 ACAACUAAACAGACAUGGCGGAUGCCGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGCCAAAUCCC-GUCCGGGAAAACUUUUCCCACUCC----------- ................(((((..((((((((......))))).(((....)))..)))(((....))).....))-))).(((((.....))))).....----------- ( -32.70, z-score = -2.26, R) >droSec1.super_0 8060970 96 - 21120651 --CACUAAACAGACAUGGC-GAUGCCGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGCCAAAUCCC-GCCCGGGAAAACUUUUCCCACUCC----------- --..............(((-(..((((((((......))))).(((....)))..)))(((....)))......)-))).(((((.....))))).....----------- ( -32.10, z-score = -2.46, R) >droYak2.chr3L_random 3089751 88 + 4797643 -----------GACAUGGCGGAUGCCGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGUUAAAUCCC-GCUCGGAAAAACUUUUCCCAUCCC----------- -----------.....(((((..((((((((......))))).(((....)))..)))(((.........)))))-))).(((((....)))))......----------- ( -25.30, z-score = -0.77, R) >droEre2.scaffold_4784 18205187 98 - 25762168 UCAACUAAACAGUCAUGGCGGAUGCCGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGCUAAAUACC-GCCC-GGAAAACUUCUCCCACUCC----------- ...(((..........(((....)))(((((......))))))))..((((....(((((((.........))))-))).-(((.......))).)))).----------- ( -29.60, z-score = -1.58, R) >droAna3.scaffold_13337 12093946 97 + 23293914 ACACAUUAAUCGACAUGGCGGAUGCAGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGAAAAACAAG-AACCAACAACAU--UGGCCGUUCC----------- ...........((.(((((.(((((.(((((......))))).(((....)))...))(((...((.....))..-.)))......))--).))))))).----------- ( -24.70, z-score = -0.97, R) >dp4.chrXR_group6 3715357 98 - 13314419 --CGAUAAACAGUCAUGGCGGAUGCCGCAGCACGUCAAUUGCAGUACGAGUACAAGGCGGUAAGUACCAAACAGACAGCUUACAAAAUUUUCACCGCUCC----------- --.(((.....)))..(((((.((((((((........)))).(((....)))..))))((((((............))))))..........)))))..----------- ( -23.10, z-score = -0.89, R) >droPer1.super_9 2008883 98 - 3637205 --CGAUAAACAGUCAUGGCGGAUGCCGCAGCACGUCAAUUGCAGUACGAGUACAAGGCGGUAAGUACCAAACAGACAGCUUACAAAAUUUUCACCGCUCC----------- --.(((.....)))..(((((.((((((((........)))).(((....)))..))))((((((............))))))..........)))))..----------- ( -23.10, z-score = -0.89, R) >droWil1.scaffold_181024 1580976 93 - 1751709 GUUAUAAAACAAACAUGGCUGAUGCCGCAGCACGUCAGUUGCAGUAUGAGUACAAGGCGGUAAGUGCUAAAUAAAUAGUUUUUCUAUGACCGC------------------ .................(((.((((.(((((......))))).)))).))).....(((((.((.((((......))))....))...)))))------------------ ( -23.10, z-score = -0.72, R) >droVir3.scaffold_13049 14560193 98 - 25233164 AAAGGUAAAGAAAUAUGGCGGAUGCCGCAGCACGUCAAUUGCAGUAUGAGUAUAAGGCGGUAAGUGUUUUACAAG-AGUUAAAAAAAAAGU-GCUGAUAC----------- ................(((....))).(((((((((...(((.......)))...))).(((((...)))))...-.............))-))))....----------- ( -18.00, z-score = -0.31, R) >droMoj3.scaffold_6680 12023930 99 + 24764193 CUAGCUAAACAAAUAUGGCGGAUGCCGCAGCACGUCAACUGCAGUACGAGUACAAAGCGGUAAGUAUUGAAAAAU-AAUAGGAAGAAAAGCGGCCGCCAC----------- ...............((((((.((((((.(((.(....)))).(((....)))...))))))..((((....)))-)................)))))).----------- ( -26.40, z-score = -1.80, R) >droGri2.scaffold_15110 8890950 99 + 24565398 AACAUUAAACAAGUAUGGCGGAUGCCGCAGCACGUCAAUUGCAGUACGAGUACAAGGCGGUAUGUGAUCAAAAGU-GCUUUGAAAAAACACCGCCGCCAC----------- ...............(((((((((((((.(((.......))).(((....)))...)))))))..........((-(.(((....))))))..)))))).----------- ( -28.70, z-score = -1.47, R) >anoGam1.chr2R 56947772 89 + 62725911 ACAACAACAGCAGCAUGGCUGACGCAGCAGCACGACAGCUACAGUACGAGUACAAGGCGGUAAGUUGUGAAAUG--GGUCGAGUUAUUUGG-------------------- ..........(((.(((((((((.((....((((((.(((...(((....)))..))).....))))))...))--.))).))))))))).-------------------- ( -22.60, z-score = -0.24, R) >triCas2.chrUn_48 370950 110 + 377042 AUAGUUUAAC-AACAUGGCGGAUGCUGCGGCAAGGCAGCUUCAAUACGAAUAUAAAGCUGUAAGUAAUAAAAAAUGCAUUGCUACUACCUCUACAAUUAAGCAAACAUAUU ...((((((.-......((((...))))(((((.(((((((.............)))))))..(((........))).))))).............))))))......... ( -18.92, z-score = 0.75, R) >consensus ACAACUAAACAGACAUGGCGGAUGCCGCAGCACGUCAGCUGCAGUACGAGUACAAGGCGGUAAGUGCUAAAUAAC_GCCCGGGAAAACUUUUCCCACUCC___________ .................((...((((((((........)))).(((....)))..))))....)).............................................. (-10.31 = -10.18 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:20 2011