| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,941,619 – 15,941,711 |
| Length | 92 |
| Max. P | 0.991990 |
| Location | 15,941,619 – 15,941,711 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Shannon entropy | 0.13428 |
| G+C content | 0.40845 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -22.79 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15941619 92 + 24543557 CCGCCGGCACAAUGGAGGCUGCAGUCCCGUUAAUAUCACAU-----ACUAAUAUUAUUAAUAACAAUGGCUGCAGUCUUGAUUCAAUUUGAUGGCUG ..((((.((.(((.((((((((((((..(((((((......-----........)))))))......)))))))))))).))).....)).)))).. ( -26.94, z-score = -2.43, R) >droSim1.chr3L 15279076 92 + 22553184 CCGCCGGCACAAUGGAGGCUGCAGUCCCGUUAAUAUCACAU-----ACUAAUAUUAUUAAUAACAAUGGCUGCAGUCUUGAUUCAAUUUGAUGGCUG ..((((.((.(((.((((((((((((..(((((((......-----........)))))))......)))))))))))).))).....)).)))).. ( -26.94, z-score = -2.43, R) >droSec1.super_0 8041752 92 + 21120651 CCGCCGACACAAUGGAGGCUGCAGUCCCGUUAAUAUCACAU-----ACUAAUAUUAUUAAUAACAAUGGCUGCAGUCUUGAUUCAAUUUGAUGGCUG ..((((.((.(((.((((((((((((..(((((((......-----........)))))))......)))))))))))).))).....)).)))).. ( -26.94, z-score = -3.07, R) >droYak2.chr3L 18535315 97 + 24197627 CCGCCGCCACAAAGGAGGCUGCAGUCCAGUUAAUAUCACAUCUCGUACUAAUAUUAUUAAUAACAAUGACUGCAGUCUUCAUUCAAUUUGAUGGCUA .....(((((((((((((((((((((..(((((((...................)))))))......)))))))))))))......)))).)))).. ( -28.81, z-score = -4.33, R) >droEre2.scaffold_4784 18186028 87 + 25762168 CCGCCGCCACAAAGGAGGCUGCAGUCCAGUUAAUAUCACAU-----ACUAAUAUUAUUAAUAACAAUGACUGCAGUCUUGAUUCAAUUUGAU----- ..............((((((((((((..(((((((......-----........)))))))......)))))))))))).............----- ( -20.54, z-score = -2.63, R) >consensus CCGCCGCCACAAUGGAGGCUGCAGUCCCGUUAAUAUCACAU_____ACUAAUAUUAUUAAUAACAAUGGCUGCAGUCUUGAUUCAAUUUGAUGGCUG ..((((.((.(((.((((((((((((..(((((((...................)))))))......)))))))))))).))).....)).)))).. (-22.79 = -23.55 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:19 2011