Locus 7614

Sequence ID	dm3.chr3L
Location	15,880,380 – 15,880,472
Length	92
Max. P	0.522469

overview

Window 1

Location	15,880,380 – 15,880,472
Length	92
Sequences	4
Columns	92
Reading direction	reverse
Mean pairwise identity	89.67
Shannon entropy	0.16488
G+C content	0.43478
Mean single sequence MFE	-25.48
Consensus MFE	-18.33
Energy contribution	-18.95
Covariance contribution	0.62
Combinations/Pair	1.08
Mean z-score	-2.03
Structure conservation index	0.72
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.06
SVM RNA-class probability	0.522469
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15880380 92 - 24543557
GCUUUGGACUCGAUGGUUGGCGGAUAUAGAACUGUCACAAUGAGUUUUUCAGCACGGCCGAAUCAAGUCUCAAAGCUUCAAAUAAACAAAAC
((((((((((.((((((((((.((...((((((.........)))))))).)).)))))..))).)))).))))))................ ( -25.70, z-score =  -2.72, R)
>droYak2.chr3L 18491913 92 - 24197627
GCUUUGGACUAGAUGGUAGACGGAUUUGGAGCUGUCACUGUGCGUUUUUCAGCACGGACAAAUCAAAUCUCAAAGCUUCAAAUAAACAAAAU
((((((((...(((....(((((........))))).((((((........))))))....)))...)).))))))................ ( -24.30, z-score =  -2.30, R)
>droSec1.super_0 7987891 92 - 21120651
GCUUUGGACUCGAUGGUUGGCGGAUAUAGAACUGUCACUAUGAGUUUUUCAGCACGGCCGAGUGCAGUCUCAAAGCUUCAAAUAGGCAAAAC
(((((((((((.(((((.(((((........))))))))))))))).....((((......)))).....))))))................ ( -27.80, z-score =  -1.89, R)
>droSim1.chr3L 15226081 92 - 22553184
GCUUUGGACUCGAUGGUUGGCGGAUAUAGAACUGUCACUAUGAGUUUUUCAGCACGGCCGAAUGCAGUCUCAAAGCUUCAAAUAAGCAAAAC
((((((((((((.((((((((.((...((((((.........)))))))).)).))))))..)).)))).))))))................ ( -24.10, z-score =  -1.23, R)
>consensus
GCUUUGGACUCGAUGGUUGGCGGAUAUAGAACUGUCACUAUGAGUUUUUCAGCACGGCCGAAUCAAGUCUCAAAGCUUCAAAUAAACAAAAC
(((((((((((.(((((.(((((........))))))))))))))).........(((........))).))))))................ (-18.33 = -18.95 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:12 2011