| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,873,635 – 15,873,728 |
| Length | 93 |
| Max. P | 0.633441 |
| Location | 15,873,635 – 15,873,728 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 83.98 |
| Shannon entropy | 0.27794 |
| G+C content | 0.43319 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -22.62 |
| Energy contribution | -22.69 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15873635 93 - 24543557 -----------------------GGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC -----------------------(((.(((((((.(((((-.((((((((((((........))))))))))))..))))))).....((....))))))).)))............ ( -25.30, z-score = -1.44, R) >droAna3.scaffold_13337 12016615 91 + 23293914 -------------------------GCAAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGGGAAUUAUGGUUAAUUUUGGCUGCCACACGGCGGAAGUUAUUAACUCGUUUGAUUGAAG -------------------------.(((((.((.(((((-.((((((((((((........))))))))))))..)))))))....(((....)))........)))))....... ( -24.30, z-score = -1.44, R) >droEre2.scaffold_4784 18126756 93 - 25762168 -----------------------GGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACUUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC -----------------------(((.(((((((.(((((-.((((((((((((........))))))))))))..))))))).....((....))))))).)))............ ( -25.30, z-score = -1.46, R) >droYak2.chr3L 18485398 93 - 24197627 -----------------------GGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC -----------------------(((.(((((((.(((((-.((((((((((((........))))))))))))..))))))).....((....))))))).)))............ ( -25.30, z-score = -1.44, R) >droSec1.super_0 7981068 93 - 21120651 -----------------------GGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC -----------------------(((.(((((((.(((((-.((((((((((((........))))))))))))..))))))).....((....))))))).)))............ ( -25.30, z-score = -1.44, R) >droSim1.chr3L 15218897 93 - 22553184 -----------------------GGGCUAAUAGGUCAGUU-UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC -----------------------(((.(((((((.(((((-.((((((((((((........))))))))))))..))))))).....((....))))))).)))............ ( -25.30, z-score = -1.44, R) >droPer1.super_9 1931938 117 - 3637205 AGACAGAAACAGGGGGAGGGCAGGGACUAAUGGGUCAGUUCUGGUUGGCUGUAGACCGAGAGUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUUUGAUUGAAC ......((((.((...(.(((.((((((........)))))).....))).)...))..((((((....(((((((.((.........)).))))))).))))))))))........ ( -27.90, z-score = 0.11, R) >dp4.chrXR_group6 3636224 117 - 13314419 AGACAGGAACAGGGAGAGGGCAGGGACUAAUGGGUCAGUUCUGGUUGGCUGUAGACCGAGAGUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUUUGAUUGAAC ......((((.((...(.(((.((((((........)))))).....))).)...))..((((((....(((((((.((.........)).))))))).))))))))))........ ( -28.30, z-score = -0.04, R) >consensus _______________________GGGCUAAUAGGUCAGUU_UAGUUGGCCGUAGCAUGUGAAUUAUGGUUAAUUUUGGCUGCCACAUUGCGGAAGUUAUUAACUCGUCUGAUUGAAC .......................(((.(((((((.(((((..((((((((((((........))))))))))))..))))))).....((....))))))).)))............ (-22.62 = -22.69 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:11 2011