| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,871,795 – 15,871,902 |
| Length | 107 |
| Max. P | 0.976030 |
| Location | 15,871,795 – 15,871,902 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.95 |
| Shannon entropy | 0.40282 |
| G+C content | 0.59448 |
| Mean single sequence MFE | -45.79 |
| Consensus MFE | -28.38 |
| Energy contribution | -28.09 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.976030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15871795 107 - 24543557 UGGCGAGGAUUGGCGAGCCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU--GCGGCGUCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUAUGGCA ..((((((((..(((((((.(..((((.((((.(((((...))))))))).)))).--.)))).)))))))))))).(((...((((.((......))))))...))). ( -51.80, z-score = -3.35, R) >droEre2.scaffold_4784 18124950 107 - 25762168 UGGCGAGGAUUGGCGAGCCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU--GCGGCGCCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUACGGCA ..(((((((((((((...(((..((((.((((.(((((...))))))))).)))).--.)))))))).)))))))).(((...((((.((......))))))...))). ( -51.50, z-score = -2.78, R) >droYak2.chr3L 18483393 107 - 24197627 UGGCGAGGAUUGGCGAGCCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU--GCGGCGUCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUACAGCA ..((((((((..(((((((.(..((((.((((.(((((...))))))))).)))).--.)))).)))))))))))).(((...((((.((......))))))...))). ( -51.10, z-score = -3.15, R) >droSec1.super_0 7979194 97 - 21120651 ----------UGGCGAGGCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU--GUGGCGUCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUAUGGCA ----------..((.(((((.((((((.((((.(((((...))))))))).))))(--((((.((((((.((....))..))))))))))).....)))))))...)). ( -41.50, z-score = -1.98, R) >droSim1.chr3L 15217009 107 - 22553184 UGGCGAGGAUUGGCGAGCCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU--GCGGCGUCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUAUGGCA ..((((((((..(((((((.(..((((.((((.(((((...))))))))).)))).--.)))).)))))))))))).(((...((((.((......))))))...))). ( -51.80, z-score = -3.35, R) >droAna3.scaffold_13337 12015107 99 + 23293914 ----------UGGCGAGCCUGACGGACUUGUAAGCUCCCAAGGAGCUGCGUGUCCUGGGCACCGCCGUGUCCUUGCAGCUUAUGACCCGCAGAUUUGUGGUCUAAGGCA ----------.((((.((((...((((.((((.(((((...))))))))).)))).))))..))))...........((((..((((.((......))))))..)))). ( -39.70, z-score = -1.43, R) >droVir3.scaffold_12970 2333200 106 + 11907090 CGGAAGUGCGGAGCAUGCUUGACCGUUGCGU-GGCAUGCGAGGAGUUGCAUGUCCU--GUGCCUGUGUUUCUAUUUCGGUUUUUGGCUAUUGAACUGUUGGCUUUGGCA .(((((..(((.((((((.........))(.-(((((((((....)))))))))).--)))))))..)))))......(((...(((((.........)))))..))). ( -33.10, z-score = -0.12, R) >consensus UGGCGAGGAUUGGCGAGCCUGACGGACUCGUAAGCUCCCAAGGAGCUGCGUGUCCU__GCGGCGUCGUGUCCUUGCGGCUUAUGACCCGCAGAUUUGUGGUCUAUGGCA ............(((((...(((((((.(((.(((((.....)))))))).))))...(((....))))))))))).(((...((.((((......))))))...))). (-28.38 = -28.09 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:10 2011