Locus 7609

Sequence ID dm3.chr3L
Location 15,849,333 – 15,849,463
Length 130
Max. P 0.757771
window10475 window10476

overview

Window 5

Location 15,849,333 – 15,849,430
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 86.46
Shannon entropy 0.25835
G+C content 0.69969
Mean single sequence MFE -43.10
Consensus MFE -35.01
Energy contribution -35.07
Covariance contribution 0.06
Combinations/Pair 1.24
Mean z-score -1.52
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.733320
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 15849333 97 - 24543557
CAUGUCGAUGAUGGGCGGGGCCACGCCCAUGUCCAGUGGUACCCCGGCCGCCUCAUCCUCGGUGGCCACGCCCGGUACCCCAAGGAUCACCGAUCCG
...((((.((((((((((((((((...........))))..))))(((((((........)))))))..))))((....))....)))).))))... ( -43.60, z-score =  -1.38, R)
>droSim1.chr3L 15194249 97 - 22553184
CAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUGGCCACGCCCGGCACCCCAAGGACCACCGAUCCG
...((((.....((((((((((((...........))))))))..(((((((........)))))))..))))((..((....)).))..))))... ( -44.10, z-score =  -1.89, R)
>droSec1.super_0 7957062 97 - 21120651
CAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUGGCCACGCCCGGCACCCCAAGGACCACCGAUCCG
...((((.....((((((((((((...........))))))))..(((((((........)))))))..))))((..((....)).))..))))... ( -44.10, z-score =  -1.89, R)
>droYak2.chr3L 18461061 97 - 24197627
UAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUGGCGACACCUGGAACCCCAAGGACCACCGAUCCA
...((((.(((((((((......)))))))((((.(((((......)))))....(((..((((....)))).))).......)))))).))))... ( -40.90, z-score =  -1.61, R)
>droEre2.scaffold_4784 18102546 97 - 25762168
UAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUGGCCACGCCUGGAACCCCAAGGACCACCGAUCCG
...((((.(((((((((......)))))))((((...(((.....(((((((........)))))))..)))(((....))).)))))).))))... ( -41.90, z-score =  -1.89, R)
>droAna3.scaffold_13337 11985199 91 + 23293914
---AAUGUCGGUGGGCGGGGUCACGCCCAUGUCAGGGGGUGCCACCCCGGCCACA---UCGGUGGCCACACCCGGAACCCCAAGGACCGUCGAUGCG
---..((.(((((((.((((((((.(((......))).)))..)))))((((((.---...))))))...)))((....))....)))).))..... ( -44.00, z-score =  -0.44, R)
>consensus
CAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUGGCCACGCCCGGAACCCCAAGGACCACCGAUCCG
...((((.(((((((((......)))))))((((...(((.....(((((((........)))))))..))).((....))..)))))).))))... (-35.01 = -35.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 15,849,366 – 15,849,463
Length 97
Sequences 7
Columns 97
Reading direction reverse
Mean pairwise identity 78.91
Shannon entropy 0.43831
G+C content 0.68921
Mean single sequence MFE -40.80
Consensus MFE -24.25
Energy contribution -25.89
Covariance contribution 1.64
Combinations/Pair 1.19
Mean z-score -1.51
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.757771
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15849366 97 - 24543557
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCCAUGUCGAUGAUGGGCGGGGCCACGCCCAUGUCCAGUGGUACCCCGGCCGCCUCAUCCUCGGUG
..((((...((((.(.(((((......).))))).))))((((((((.(((((((((...........))))..))))).)))..))))).)))).. ( -40.50, z-score =  -0.27, R)
>droSim1.chr3L 15194282 97 - 22553184
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCCAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUG
..((((..(((...((((((.((((((..((((...))))...(((((((......))))))).....))))))...))).)))..)))..)))).. ( -43.10, z-score =  -1.57, R)
>droSec1.super_0 7957095 97 - 21120651
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCCAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUG
..((((..(((...((((((.((((((..((((...))))...(((((((......))))))).....))))))...))).)))..)))..)))).. ( -43.10, z-score =  -1.57, R)
>droYak2.chr3L 18461094 97 - 24197627
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCUAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUG
..((((..(((...((((((.((((((..((((...))))...(((((((......))))))).....))))))...))).)))..)))..)))).. ( -43.10, z-score =  -1.72, R)
>droEre2.scaffold_4784 18102579 97 - 25762168
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCUAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUG
..((((..(((...((((((.((((((..((((...))))...(((((((......))))))).....))))))...))).)))..)))..)))).. ( -43.10, z-score =  -1.72, R)
>droAna3.scaffold_13337 11985232 91 + 23293914
CUCCGAAAAGGCAAGCGCCACGGCCACGCCGGCAAUGUCG---GUGGGCGGGGUCACGCCCAUGUCAGGGGGUGCCACCCCGGCCACAUCGGUG---
..((((...(((....)))..((((.(((((((...))))---)))...((((((((.(((......))).)))..)))))))))...))))..--- ( -47.90, z-score =  -2.02, R)
>droWil1.scaffold_180727 1307942 77 + 2741493
GUUCGAAAAGGCAAGCGCCGGAGCCACACCGGCCAUGUCAACAAUGACCCA---UACGCCAGCAACAGCUGGAUCGGCAA-----------------
((.(((...((((.(.(((((.......)))))).))))............---....(((((....))))).)))))..----------------- ( -24.80, z-score =  -1.69, R)
>consensus
CUCCGAAAAGGCAAGCGCCGCUGCCACGCCGGCCAUGUCGAUGAUGGGCGGUGCCACGCCCAUGUCCAGUGGCACCCCGGCCGCCUCCUCCUCGGUG
..(((....(((....)))..((((((..((((...))))...(((((((......))))))).....))))))...))).((((........)))) (-24.25 = -25.89 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:08 2011