| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,839,684 – 15,839,778 |
| Length | 94 |
| Max. P | 0.594501 |
| Location | 15,839,684 – 15,839,778 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.93 |
| Shannon entropy | 0.19868 |
| G+C content | 0.44046 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -20.55 |
| Energy contribution | -19.81 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15839684 94 + 24543557 AGCCACUCGGCACCCAAGUUCA-UUGUAGUCGAGUUUAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAGCAGAGAUUGCAGGUUAG (((((((((((...(((.....-)))..)))))))....(((((((.(((..((........))..)))....))))))).........)))).. ( -25.50, z-score = -1.73, R) >droSim1.chr3L 15184497 94 + 22553184 AGCCACUCGGCACCCAAGUUCA-UUGUAGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAGCAGAGAUUGCAGGUCAG .(((....)))...........-((((((((..(((((..(.((((.((((((.......)))))))))).)..)))))...))))))))..... ( -26.00, z-score = -1.38, R) >droSec1.super_0 7947375 94 + 21120651 AGCCACUCGGCACCCAAGUUCA-UUGUAGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAACAGAGAUUGCAGGUCAG .(((....)))...........-((((((((..(((((..(.((((.((((((.......)))))))))).)..)))))...))))))))..... ( -26.00, z-score = -1.58, R) >droYak2.chr3L 18448594 94 + 24197627 AGCCACUCGGCACCCAAGUUCA-UUGUAAUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUCAGCAGAGAUUGCGGGUCAG .(((....)))((((....(((-((((....((((.....))))..)))))))...((((((..((((((....))))))))))))..))))... ( -27.70, z-score = -2.05, R) >droEre2.scaffold_4784 18093348 94 + 25762168 AGCCACUCGGCACCCAAGUUCA-UUGUAGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAGCAGAGAUUGCAGGUCAG .(((....)))...........-((((((((..(((((..(.((((.((((((.......)))))))))).)..)))))...))))))))..... ( -26.00, z-score = -1.38, R) >droAna3.scaffold_13337 11975978 93 - 23293914 AGUCGGUUCA-GCCCAAGUUCA-UUGUAGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGCUGAACAGAGAUUGCAGGUCAU ....((....-.))........-((((((((..(((((((..((((.((((((.......))))))))))..)))))))...))))))))..... ( -26.70, z-score = -2.10, R) >dp4.chrXR_group6 3602353 92 + 13314419 ACCCAC---GUGCCCACGUUCAGUUGUGGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAACCGAGAUUGCAGGUUGU ....((---.((((((((......)))))(((.(((((..(.((((.((((((.......)))))))))).)..))))))))....))).))... ( -26.70, z-score = -1.82, R) >droPer1.super_9 1898208 92 + 3637205 ACCCAC---GUGCCCACGUUCAGUUGUGGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAACCGAGAUUACAGGUUGU ..((((---((....)))).....(((((((..(((((..(.((((.((((((.......)))))))))).)..)))))...))))))))).... ( -24.20, z-score = -1.22, R) >consensus AGCCACUCGGCACCCAAGUUCA_UUGUAGUCGAGUUCAGUGCUCAAGCAAUGAUUGAGUUUUAUUGUUGAUUGUUGAACAGAGAUUGCAGGUCAG .......................((((((((..(((((..(.((((.((((((.......)))))))))).)..)))))...))))))))..... (-20.55 = -19.81 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:05 2011