| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,821,412 – 15,821,467 |
| Length | 55 |
| Max. P | 0.998397 |
| Location | 15,821,412 – 15,821,467 |
|---|---|
| Length | 55 |
| Sequences | 9 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 63.63 |
| Shannon entropy | 0.76882 |
| G+C content | 0.61624 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.18 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.35 |
| SVM RNA-class probability | 0.998397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15821412 55 + 24543557 CAACAGCUGUCACCGGUACCGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((((....((((.....)))).)))))))))))))....... ( -27.10, z-score = -3.28, R) >droSim1.chr3L 15164984 55 + 22553184 CAACAGCUGUCACCGGUACCGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((((....((((.....)))).)))))))))))))....... ( -27.10, z-score = -3.28, R) >droSec1.super_0 7929519 55 + 21120651 CCACAGCUGUUACCGGUACCGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((((....((((.....)))).)))))))))))))....... ( -25.00, z-score = -2.24, R) >droYak2.chr3L 18429987 55 + 24197627 CAACAGCUGUCACCGGUACAGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((((....((((.....)))).)))))))))))))....... ( -27.10, z-score = -3.61, R) >droEre2.scaffold_4784 18074714 55 + 25762168 CAACAGCUGUUACCGGUACAGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((((....((((.....)))).)))))))))))))....... ( -25.00, z-score = -2.92, R) >droGri2.scaffold_15110 21319980 52 + 24565398 ---CUGCCACCGCCGCCACUGGUGGCUCGGUCACAGCGGGCAGUGGCCUGGGCAA ---.((((...((((((...))))))..((((((........))))))..)))). ( -25.00, z-score = -0.45, R) >droAna3.scaffold_13337 11960643 52 - 23293914 ---CGACCAUCGCCGGAACAAACGGUAACUCCACCACCGGUCCAGGUUCCUCCAC ---.((((...(((((.......(((......))).)))))...))))....... ( -10.60, z-score = 0.08, R) >dp4.chrXR_group6 3584160 55 + 13314419 CAGCUGCAGCCGGAAAUGCAAGUGGAAAUGCUAGUUCUGCAGGCAACACAGGCCU ........(((.....(((..(..(((.......)))..)..))).....))).. ( -12.90, z-score = 1.27, R) >droPer1.super_9 1880081 55 + 3637205 CAGCUGCAGCCGGAAAUGCAAGUGGAAAUUCUAGUUCUGCAGGCAACACAGGCCU ........(((.....(((..(..(((.......)))..)..))).....))).. ( -12.90, z-score = 0.70, R) >consensus CAACAGCUGUCACCGGUACAGGUGGUAAUUCCACGGCUGGUGGCGGCUCCUCCGU ....(((((((((((.......(((.....)))....)))))))))))....... (-12.72 = -12.18 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:03 2011