Locus 7604

Sequence ID	dm3.chr3L
Location	15,814,543 – 15,814,599
Length	56
Max. P	0.932155

overview

Window 9

Location	15,814,543 – 15,814,599
Length	56
Sequences	12
Columns	56
Reading direction	reverse
Mean pairwise identity	89.77
Shannon entropy	0.21907
G+C content	0.33631
Mean single sequence MFE	-9.92
Consensus MFE	-8.83
Energy contribution	-8.92
Covariance contribution	0.09
Combinations/Pair	1.07
Mean z-score	-1.80
Structure conservation index	0.89
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.37
SVM RNA-class probability	0.932155
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15814543 56 - 24543557
UUCGUGGACGAAUUUCUCCUUUACCAAGAACUUCAUAGCAAAUGUGUUUUGCUAAA
.........(((.((((.........)))).))).(((((((.....))))))).. (  -9.60, z-score =  -1.28, R)
>droGri2.scaffold_15110 21313870 56 - 24565398
UUCGUGGACGAAUUUCUCAUUCACCAAAAAUUUUAUAGCAAACGUCUUUUGCUAAG
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -10.30, z-score =  -2.61, R)
>droMoj3.scaffold_6680 7930058 56 + 24764193
UUCGUGGACGAAUUUCUCAUUCACCAAAAAUUUCAUAGCAAAUGUAUUUUGCUAAG
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -11.20, z-score =  -2.96, R)
>droVir3.scaffold_13049 3007022 56 + 25233164
UUCGUGGACGAAUUUCUCAUUCACCAAAAAUUUUAUAGCAAAUGUUUUUUGCUAAG
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -11.20, z-score =  -2.82, R)
>droWil1.scaffold_180727 1264924 56 + 2741493
UUCGUGGACGAAUUUCUCUUUCACAAAAAAUUUCAUAGCAAAUGUUUUUUGCUAAA
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -12.10, z-score =  -3.11, R)
>droPer1.super_9 1874363 56 - 3637205
UUCGUGGACGAAUUUUACAUUCACCAAAAACUGGAUAGAAAAUGUGUUUUGCUAAA
...(..((((.(((((..(((((........)))))..))))).)).))..).... (  -7.50, z-score =  -0.17, R)
>dp4.chrXR_group6 3578525 56 - 13314419
UUCGUGGACGAAUUUUACAUUCACCAAAAACUGGAUAGAAAAUGUGUUUUGCUAAA
...(..((((.(((((..(((((........)))))..))))).)).))..).... (  -7.50, z-score =  -0.17, R)
>droAna3.scaffold_13337 11955264 56 + 23293914
CUCGUGGACGAACUUCUCAUUCACCAAAAACUUUAUAGCAAAUGUCUUUUGCUAAA
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -11.20, z-score =  -3.34, R)
>droEre2.scaffold_4784 18067765 56 - 25762168
UUCGUGGACGAAUUUCUCCUUUACCAAGAACUUCAUAGCAAAUGUGUUUUGCUAAA
.........(((.((((.........)))).))).(((((((.....))))))).. (  -9.60, z-score =  -1.28, R)
>droYak2.chr3L_random 2510209 56 - 4797643
UUCGUGGACGAAUUUCUCCUUUACCAAGAACUUCAUAGCAAAUGUGUUUUGCUAAA
.........(((.((((.........)))).))).(((((((.....))))))).. (  -9.60, z-score =  -1.28, R)
>droSec1.super_0 7922684 56 - 21120651
UUCGUGGACGAAUUUCUCCUUUACCAAGAACUUCAUAGCAAAUGUGUUUUGCUAAA
.........(((.((((.........)))).))).(((((((.....))))))).. (  -9.60, z-score =  -1.28, R)
>droSim1.chr3L 15157914 56 - 22553184
UUCGUGGACGAAUUUCUCCUUUACCAAGAACUUCAUAGCAAAUGUGUUUUGCUAAA
.........(((.((((.........)))).))).(((((((.....))))))).. (  -9.60, z-score =  -1.28, R)
>consensus
UUCGUGGACGAAUUUCUCAUUCACCAAAAACUUCAUAGCAAAUGUGUUUUGCUAAA
...(((((.((.....)).)))))...........(((((((.....))))))).. ( -8.83 =  -8.92 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:02 2011