| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,788,381 – 15,788,474 |
| Length | 93 |
| Max. P | 0.536943 |
| Location | 15,788,381 – 15,788,474 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 85.91 |
| Shannon entropy | 0.28629 |
| G+C content | 0.32229 |
| Mean single sequence MFE | -12.86 |
| Consensus MFE | -7.73 |
| Energy contribution | -7.69 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15788381 93 + 24543557 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUCUUCC---------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).))))))......................---------------- ( -12.80, z-score = -2.92, R) >droSim1.chr3L 15129040 93 + 22553184 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUCUUCC---------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).))))))......................---------------- ( -12.80, z-score = -2.92, R) >droSec1.super_0 7898704 94 + 21120651 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUUCUUCC--------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).)))))).......................--------------- ( -12.80, z-score = -2.88, R) >droYak2.chr3L 18341707 93 + 24197627 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUCUUCC---------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).))))))......................---------------- ( -12.80, z-score = -2.92, R) >droEre2.scaffold_4784 18043673 93 + 25762168 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUCUUCC---------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).))))))......................---------------- ( -12.80, z-score = -2.92, R) >droAna3.scaffold_13337 11930631 109 - 23293914 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUCUUCCGGUUUAUACAGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUUUUCUGCCAGGUCCUUUUCCA ........(((((---(.(((((...............(((((((.......)))))))...))))).))))))..........................((.......)). ( -9.77, z-score = 0.21, R) >dp4.chrXR_group6 13303367 105 - 13314419 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACUGUUUAGAUCGAUUGCAUUUUAUAGGUUGUUU-AAUGUUUUUUCUUCCAGCA--UCCUGUCCU- .............---..(((((...(((..(((....((((....))))...)))..))).)))))..(((((.((((.-...(......)....))))--.)))))...- ( -12.20, z-score = -0.59, R) >droPer1.super_12 1726694 105 - 2414086 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACUGUUUAGAUCGAUUGCAUUUUAUAGGUUGUUU-AAUGUUUUUUCUUCCAGCA--UCCUGUCCU- .............---..(((((...(((..(((....((((....))))...)))..))).)))))..(((((.((((.-...(......)....))))--.)))))...- ( -12.20, z-score = -0.59, R) >droVir3.scaffold_13049 22252136 90 + 25233164 CCAUUUCCAUUAU---ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUGCCUGU------------------- ........(((((---(.(((((...(((..(((....((((....))))...)))..))).))))).))))))...................------------------- ( -12.80, z-score = -1.67, R) >droMoj3.scaffold_6680 16858814 82 + 24764193 CCAUUUCCAUUAU---ACAAUGCCACAUUCCUCUUUUCCGGUUUAUACCAUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUG--------------------------- ........(((((---(.(((((...(((..(((.....(((....)))....)))..))).))))).))))))...........--------------------------- ( -10.20, z-score = -2.11, R) >droGri2.scaffold_15110 3275427 96 - 24565398 CCAUUUCCAUUAUGGUAUAAUGCCACAUUUUUCUUUUCCGGUUUAUAUCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUCUUAAUGUGGCAUGUUGU---------------- ((((.......))))....((((((((((..........((((((.......))))))(((.((........))..)))..)))))))))).....---------------- ( -20.30, z-score = -2.51, R) >consensus CCAUUUCCAUUAU___ACAAUGCCACAUUUCUCUUUUCCGGUUUAUACCGUUUAGAUCGAUUGCAUUUUAUAGUUUGUUUUAAUGUUUUUUCUUCC________________ .((((.............(((((...(((..(((....((((....))))...)))..))).)))))..............))))........................... ( -7.73 = -7.69 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:30:00 2011