| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,411,799 – 5,411,866 |
| Length | 67 |
| Max. P | 0.528502 |
| Location | 5,411,799 – 5,411,866 |
|---|---|
| Length | 67 |
| Sequences | 8 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.51698 |
| G+C content | 0.41401 |
| Mean single sequence MFE | -14.44 |
| Consensus MFE | -5.73 |
| Energy contribution | -5.70 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5411799 67 - 23011544 -AACCGGAAGCUCCCAUUUUGUUUCUAACCCCGAAACGAAUGGAAAGAAUUUCCAUAAGAAGCUCAUG -....(((((.((((((((.(((((.......)))))))))))...)).))))).............. ( -14.90, z-score = -2.48, R) >droSim1.chr2L 5203364 67 - 22036055 -AACCGGAAGCUCCCAUUUUGUUUCUAACCCCGAAACGAAUGGGAAGAAUUUCCAUAAGAAGCUCAUG -....((((.(((((((((.(((((.......)))))))))))).))...)))).............. ( -18.50, z-score = -3.08, R) >droSec1.super_5 3486505 67 - 5866729 -AACCGGAAGCUCCCAUUUUGUUUCUAACUCCGAAACGAAUGGAAAGAAUUUCCAUAAGAAGCUCAUG -....(((((.((((((((.(((((.......)))))))))))...)).))))).............. ( -14.90, z-score = -2.16, R) >droYak2.chr2L 8537889 67 + 22324452 -AACCGGAAGCUCCCAUUUUGUUUCUACCCCCGAAACGAAUGUGAAGAAUUUCCAUAAGAAGCUCUUU -....(((((.((.(((((((((((.......)))))))).)))..)).))))).............. ( -13.40, z-score = -2.19, R) >droEre2.scaffold_4929 5493712 67 - 26641161 -AACCGGAAGCUUCCAUUUUGUUUUUACCCCCGAAACGAAUGGAGAGAAUUUCCAUAAGAAGCGCAUU -........(((((....(((((((.......)))))))(((((((...)))))))..)))))..... ( -14.90, z-score = -2.23, R) >droAna3.scaffold_12916 6437538 56 + 16180835 -AGCCGGAAGCUUCCAUUUUGUUUUUAGCUU-----CGAAUGAGGAGGGCUAUAAGGAGUCU------ -(((((((....))).............(((-----(......))))))))...........------ ( -11.70, z-score = 0.72, R) >dp4.chr4_group1 4709755 67 - 5278887 GAGCCGGAAGCUUCCAUUUUGUUUUUGGC-CAAAAACAAAGAAGCAGAAAUGUAAGCAGAAUGUAAUG .........((((.((((((.((((((..-......))))))....)))))).))))........... ( -13.60, z-score = -1.05, R) >droPer1.super_5 6305475 67 + 6813705 GAGCCGGAAGCUUCCAUUUUGUUUUUGGC-CAAAAACAAAGAAGCAGAAAUGUAAGCAGAAUGUAAUG .........((((.((((((.((((((..-......))))))....)))))).))))........... ( -13.60, z-score = -1.05, R) >consensus _AACCGGAAGCUCCCAUUUUGUUUCUAACCCCGAAACGAAUGGGAAGAAUUUCCAUAAGAAGCUCAUG .....((......))..((((((((.......))))))))............................ ( -5.73 = -5.70 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:50 2011