| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,770,870 – 15,771,023 |
| Length | 153 |
| Max. P | 0.889027 |
| Location | 15,770,870 – 15,770,927 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 92.98 |
| Shannon entropy | 0.11386 |
| G+C content | 0.41228 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -13.75 |
| Energy contribution | -13.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15770870 57 - 24543557 GCUUCCCUUUCGGCGUUUGAGAUAGACAGUUCUUAGCCGAAAGAAUUACGCAUUUGA ((....((((((((...(((((........)))))))))))))......))...... ( -15.60, z-score = -2.29, R) >droYak2.chr3L 18323632 57 - 24197627 GCUUCUCUUUCGGUGUUUGAGAUAGACAGUUCUUAGCUGAAAGAAUUACGACUUUAA .....(((((((((...(((((........))))))))))))))............. ( -13.20, z-score = -1.14, R) >droSec1.super_0 7881388 57 - 21120651 GCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUAGCCGAAAGAAUUACGCAUUCGA ((...(((((((((...(((((........)))))))))))))).....))...... ( -17.50, z-score = -2.28, R) >droSim1.chr3L 15111474 57 - 22553184 GCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUAGCCAAAAGAAUUACGCAUUUGA ((...(((((.(((...(((((........)))))))).))))).....))...... ( -11.60, z-score = -0.60, R) >consensus GCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUAGCCGAAAGAAUUACGCAUUUGA .....(((((((((...(((((........))))))))))))))............. (-13.75 = -13.88 + 0.12)
| Location | 15,770,927 – 15,771,023 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.52 |
| Shannon entropy | 0.09395 |
| G+C content | 0.38054 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -12.92 |
| Energy contribution | -14.12 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15770927 96 + 24543557 CCAAUCAAUGUCUUUCACUUCAGCUUUGAAUUUACCUUUCAAUUUU-CCUUUACCUUUACCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((....(((((.((.(((((.......)))))....-................(((((....)))))...)))))))..))).)))) ( -17.30, z-score = -3.18, R) >droSim1.chr3L 15111531 97 + 22553184 CCAAUCAAUGUCUUUCCCUUCAGCAUUGAAUUUACCUUUCAAUUUUACCUUUACCUUUACCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((.....((((.((((((((.......))))).....................(((((....)))))..)))))))...))).)))) ( -16.70, z-score = -3.14, R) >droSec1.super_0 7881445 97 + 21120651 CCAAUCAAUGUCUUUCCCUUCAGCUUUGAAUUUACCUUUCAAUUUUACCUUUACCUUUACCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((.....((((.((.(((((.......))))).....................(((((....)))))...))))))...))).)))) ( -15.50, z-score = -2.75, R) >droYak2.chr3L 18323689 95 + 24197627 CCAAUCAAUGUCUUUCACUCCGGCUUGGAAUUUACCUUUCAAUUUA-CCU-UACCUUUUCCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((....(((.((..((((((......))))))....-...-............(((((....)))))....)).)))..))).)))) ( -13.60, z-score = -0.45, R) >droEre2.scaffold_4784 18026450 96 + 25762168 CCAAUCAAUGUCUUUCACCCCAGCUUUGAAUUUACCUUUCAAUUUA-CCUCUACCUUUUCCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((.............(((((.......)))))....-.........(((((..(((((....)))))...).))))...))).)))) ( -12.50, z-score = -1.32, R) >consensus CCAAUCAAUGUCUUUCACUUCAGCUUUGAAUUUACCUUUCAAUUUU_CCUUUACCUUUACCUUUAACCACUCGGUUGUCUGCGAAGUUUGACUUUGA ....((((.(((....(((((.((.(((((.......))))).....................(((((....)))))...)))))))..))).)))) (-12.92 = -14.12 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:53 2011