| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,765,652 – 15,765,746 |
| Length | 94 |
| Max. P | 0.641395 |
| Location | 15,765,652 – 15,765,746 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.85 |
| Shannon entropy | 0.46323 |
| G+C content | 0.39798 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -9.43 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15765652 94 + 24543557 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCACCAGC--GAUGCCGGUUACCAGUUCCCC-GUU--------------- ..(((((..(..((((((((((......))))...))))))..)..))))-)...((((.(((((..((..--..))..)))))...))))...-...--------------- ( -20.20, z-score = -1.71, R) >droGri2.scaffold_15110 21265405 71 + 24565398 UCUGCUC-GACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCAAAC--AU-------------------------------------- ..(((((-....((((((((((......))))...)))))).....))))-)...................--..-------------------------------------- ( -13.30, z-score = -2.26, R) >droMoj3.scaffold_6680 7878653 71 - 24764193 UCUGCUU-GGCGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCAAAC--AU-------------------------------------- ..(((((-....((((((((((......))))...)))))).....))))-)...................--..-------------------------------------- ( -11.50, z-score = -0.55, R) >droVir3.scaffold_13049 2957163 71 - 25233164 UCUGCUC-GACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCAAGC--AU-------------------------------------- ..(((((-....((((((((((......))))...)))))).....))))-)...................--..-------------------------------------- ( -13.30, z-score = -1.48, R) >droAna3.scaffold_13337 11901809 72 - 23293914 UCUGCUCCAACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCAAGC--GU-------------------------------------- ..(((((.....((((((((((......))))...)))))).....))))-)...................--..-------------------------------------- ( -12.60, z-score = -1.21, R) >droYak2.chr3L 18318579 107 + 24197627 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAAGCUCGAGC--GAUGCCGGUUACCAGUUACCA-GUUCCCAGUGGCCCGU-- ..(((((....(((((((.......)))))))..............((((-............))))))))--)..((.((((((..(..(...-.)..)..)))))).))-- ( -23.30, z-score = -0.26, R) >droSec1.super_0 7876321 110 + 21120651 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCCAGC--GAUGCCGGUUACCAGUUCCCCAGUUCCCAGUUCCCCAUUU ..(((((..(..((((((((((......))))...))))))..)..))))-)...((((.(((((..((..--..))..)))))...))))...................... ( -20.50, z-score = -1.49, R) >droSim1.chr3L 15106187 110 + 22553184 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC-AAAUGAACCUAACCUCCAGC--GAUGCCGGUUACCAGUUCCCCAGUUCCCAGUUCCCCAUUU ..(((((..(..((((((((((......))))...))))))..)..))))-)...((((.(((((..((..--..))..)))))...))))...................... ( -20.50, z-score = -1.49, R) >droWil1.scaffold_180727 1193901 101 - 2741493 UCUGCUC-UACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGCCAAAUGAACCUAACCUCAAGUUUGCCUCCACCUAACGCCUACCACCUCCCUC----------- ...((((-((..((((((((((......))))...))))))...))))))(((((((........)))..))))............................----------- ( -14.00, z-score = -1.09, R) >droPer1.super_12 1708026 72 - 2414086 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGGAUUUAAAAGAUUUAGAGC-AAAUGAACCCAACCUCAAGC--GU-------------------------------------- ..(((((..(..((((((((((........))).)))))))..)..))))-)...................--..-------------------------------------- ( -13.70, z-score = -1.07, R) >dp4.chrXR_group6 13285042 72 - 13314419 UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGGAUUUAAAAGAUUUAGAGC-AAAUGAACCCAACCUCAAGC--GU-------------------------------------- ..(((((..(..((((((((((........))).)))))))..)..))))-)...................--..-------------------------------------- ( -13.70, z-score = -1.07, R) >consensus UCUGCUCCGACGCUUUUAGUCUAAAUAAAGGCAUUUAAAAGAUUUAGAGC_AAAUGAACCUAACCUCAAGC__GU______________________________________ ...((((.....((((((((((......))))...)))))).....))))............................................................... ( -9.43 = -9.53 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:52 2011