| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,765,277 – 15,765,396 |
| Length | 119 |
| Max. P | 0.992690 |
| Location | 15,765,277 – 15,765,370 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 68.38 |
| Shannon entropy | 0.62166 |
| G+C content | 0.39561 |
| Mean single sequence MFE | -25.03 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.36 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.992690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15765277 93 - 24543557 AAGGUUUGUCUGACUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC--AUUUUU-----UUGUUGUUGUUUUGCAGGCUGCUCAA---GACUCCUUC-- ((((...((((((((((.((.......)).))))((((.(.((((((....(--(.....-----.))....))))))...).)))))).)---))).)))).-- ( -24.10, z-score = -0.78, R) >droEre2.scaffold_4784 18020253 88 - 25762168 AAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC--AUUU----------UUUUUGUUUAGCAGGAAGCCUAA---GACUCCUUC-- (((((((((((((((((.((.......)).)))))))))))))...(((((.--...(----------((((((.....)))))))...))---))).)))).-- ( -27.30, z-score = -2.89, R) >droYak2.chr3L 18318078 89 - 24197627 AAGGUUUGUCUGUCU--GUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC--AUUUU-------GUUUUUUGUUUUGCAGGAAGCCUGG---GACUCCUUC-- (((((((((((((((--(((((....))))).))))))))))).....(..(--(....-------((((((((.....)))))))).)).---.)..)))).-- ( -25.90, z-score = -1.89, R) >droSec1.super_0 7875839 95 - 21120651 AAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC--AUUUUU------UUUUGUUGUUUUGCAGGCUGCCUAAGAAGACUCCUUC-- (((((((((((((((((.((.......)).)))))))))))))...((((((--......------....((......))(((...)))..)))))).)))).-- ( -28.30, z-score = -2.23, R) >droSim1.chr3L 15105693 101 - 22553184 AAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC--AUUUUUUUUUUUUUUUGUUGUUUUGCAGGCUGCCUAAGAAGACUCCUUC-- (((((((((((((((((.((.......)).)))))))))))))...((((((--................((......))(((...)))..)))))).)))).-- ( -28.30, z-score = -2.16, R) >droAna3.scaffold_13337 11901439 99 + 23293914 AAAGUUUGUCUGCUUCGG-UUAAGUGUAAGCGACGCAGGCAAAAGUGUUUUCCGCUUCUUGUUUUUCCGUUUUUUUUUGCAGAGAGCCUAA---GAAUCCUUC-- ....(((((((((.(((.-(((....))).))).)))))))))((.((((((.((.......................)).))))))))..---.........-- ( -24.70, z-score = -1.29, R) >droWil1.scaffold_180727 1193589 105 + 2741493 AAAUAAUAUUUAAUUUGAUUUAAAAAGAGCUUAACUGGGCUUAACACUUUGAUUCUCCAACAGUUUAAGGUAAGACUCAACGUUAACUUAAGCCUCUCACCUCUA ........(((((......))))).((((.......((((((((.((.((((.(((((..........))..))).)))).))....)))))))).....)))). ( -16.60, z-score = -0.78, R) >consensus AAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUUUUC__AUUUUU_____UUUUUUUUGUUUUGCAGGCAGCCUAA___GACUCCUUC__ ....(((((((((((((.((.......)).))))))))))))).............................................................. (-14.15 = -14.36 + 0.21)
| Location | 15,765,298 – 15,765,396 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 63.34 |
| Shannon entropy | 0.73086 |
| G+C content | 0.45916 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -8.72 |
| Energy contribution | -10.06 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15765298 98 - 24543557 UGGGAUGGAGUGCCUGCGCCAGGACGAAGGUUUGUCUGACUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGC-GUUUUCAUUUUUUUGUUGUUGUUUUG------- ..........(((((((....((((((....))))))..((((.((.......)).)))))))))))(((((-(....((......))....)))))).------- ( -27.10, z-score = -0.63, R) >droEre2.scaffold_4784 18020274 91 - 25762168 UGGCAAGGAGUUGCU--GGCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGC-GUUUUCAUUUUUUUUGUUUAG------------ .(((((((((.....--.(.((((((....(((((((((((((.((.......)).)))))))))))))..)-))))))...)))))))))...------------ ( -29.90, z-score = -3.20, R) >droYak2.chr3L 18318099 92 - 24197627 UGGAAUGGAGUUGCU--GCCAGGAAGAAGGUUUGUCUGUCU--GUUUAAAUGUAAGCGAGGCAGGCAAAAGC-GUUUUCAUUUUGUUUUUUGUUUUG--------- .(((((((((.((((--(((........)))((((((((((--(((((....))))).)))))))))).)))-).))))))))).............--------- ( -28.40, z-score = -2.91, R) >droSec1.super_0 7875863 97 - 21120651 UAGGAUGGAGUGCCUGCGCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGC-GUUUUCAUUUUUUU-UUGUUGUUUUG------- (((((..(((((...((((..((((....))))((((((((((.((.......)).))))))))))....))-))...)))))..))-)))........------- ( -31.50, z-score = -2.57, R) >droSim1.chr3L 15105717 103 - 22553184 UGGGAUGGAGUGCCUGCGCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGC-GUUUUCAUUUUUUUUUUUUUUUGUUGUUUUG-- .(((((((((..((((...))))(((....(((((((((((((.((.......)).)))))))))))))..)-)))))))))))....................-- ( -30.40, z-score = -1.82, R) >droAna3.scaffold_13337 11901460 87 + 23293914 -----------------GCCAGGACGAAAGUUUGUCUGCUUCGG-UUAAGUGUAAGCGACGCAGGCAAAAGU-GUUUUCCGCUUCUUGUUUUUCCGUUUUUUUUUG -----------------..((((((....)(((((((((.(((.-(((....))).))).)))))))))(((-(.....))))))))).................. ( -22.90, z-score = -1.27, R) >droVir3.scaffold_13049 2957012 92 + 25233164 GGAGUCGGGGGUGUCAGC-CAGAAC-GUGGCCCGCCUGUC--AGUUUAAUGUUUAGCAUUGGAGGCUAAAUUCAUUCCCAUUUCUCUGGAGUUCUC---------- ((((..(((((((..(((-(.((.(-(.((....))))))--..(((((((.....))))))))))).....)))))))....)))).........---------- ( -25.50, z-score = -0.09, R) >droGri2.scaffold_15110 21265291 83 - 24565398 GGGAGUGGGAUAGCUGGCGCGGGAC-AUGCCCCGCCUGUC--AGUUUAAUGUUUAGCGUUCGAGGCAAAAAUUGUUCUCGGCUCUC-------------------- ((((((.....((((((((((((..-....)))))..)))--))))..............(((((((.....)).)))))))))))-------------------- ( -28.70, z-score = -0.94, R) >consensus UGGGAUGGAGUGGCUG_GCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGC_GUUUUCAUUUUUUUGUUUUUGUUU_________ ....................(((((.....(((((((((....(((((....)))))...)))))))))....)))))............................ ( -8.72 = -10.06 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:51 2011