| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,755,117 – 15,755,212 |
| Length | 95 |
| Max. P | 0.506232 |
| Location | 15,755,117 – 15,755,212 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 73.15 |
| Shannon entropy | 0.50418 |
| G+C content | 0.33648 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -9.21 |
| Energy contribution | -9.68 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15755117 95 + 24543557 GCAAAAAAAUAUGAAAUGUGCUACAAAGGAUCUUAAGAGGCAUAU----GGCUUAAGCUUAAAUGAAGCUUAAGACCGGCACAUUUUUGUCUGAAAUAA ............((((((((((.....(..((....))..)....----(((((((((((.....))))))))).))))))))))))............ ( -25.00, z-score = -3.14, R) >droEre2.scaffold_4784 18010286 92 + 25762168 GCAAAAA--UAUGAAAUGUGCUGCAAAAGAUUUCAAGGGGCAUAU----GGCUUUAGCU-AAAUGAAGCUUAAGACCGGCAAAUAUUUUUCGGAAACAC (.(((((--(((...(((((((.(............).)))))))----(((((.((((-......)))).))).)).....)))))))))(....).. ( -21.00, z-score = -1.72, R) >droYak2.chr3L 18307752 94 + 24197627 GCAAAAAA-UAUGAAAUGUGCUACAGAAGAUCUUAAGAGGCAUAU----GGCUUAAACUUAAAUGAAGCUUAAGACCGGCAAACUUUUUCAGGAAAAAU ((......-......(((((((.(..((....))..).)))))))----(((((((.(((.....))).))))).)).))................... ( -14.90, z-score = -0.32, R) >droSec1.super_0 7865761 94 + 21120651 GCAAAAAA-UAUGAAAUGUGCUACAAAGGAUCUUAAGAGGCAUAU----GGCUUAAGCUUAAAUGAAGCUUAAGACCGGCUAAUAUGUGUCUUAAAUAA (((....(-(.....)).)))...........((((((.((((((----(((((((((((.....))))))))).)).....)))))).)))))).... ( -23.80, z-score = -2.83, R) >droSim1.chr3L 15095591 94 + 22553184 GCAAAAAA-UAUGAAAUGUGCUACAAAGGAUCUUAAGAGGCAUAU----GGCUUAAGCUUAAAUGAAGCUGAAGACCGGCAAGUAUCUAUCUUAAAUAA ((......-......(((((((.(............).)))))))----(((((.(((((.....))))).))).)).))................... ( -16.90, z-score = -0.28, R) >droGri2.scaffold_15110 21255390 96 + 24565398 GCAAAA---UUUUCAAUGCGCUGCACAACAAACGAAAAGGCAUUUUUUUAGUUCAAAGUGAAUUAUGGAAAUAAGUUUAUUGGAGCAUUCGUUAUAUAC (((...---.......)))...........((((((.....(((((..((((((.....))))))..)))))..((((....)))).))))))...... ( -14.40, z-score = 0.23, R) >consensus GCAAAAAA_UAUGAAAUGUGCUACAAAAGAUCUUAAGAGGCAUAU____GGCUUAAGCUUAAAUGAAGCUUAAGACCGGCAAAUAUUUUUCUGAAAUAA ((.............(((((((.(............).)))))))....(((((.(((((.....))))).))).)).))................... ( -9.21 = -9.68 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:49 2011