| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,745,175 – 15,745,252 |
| Length | 77 |
| Max. P | 0.604115 |
| Location | 15,745,175 – 15,745,252 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 69.05 |
| Shannon entropy | 0.57994 |
| G+C content | 0.38150 |
| Mean single sequence MFE | -16.02 |
| Consensus MFE | -7.63 |
| Energy contribution | -9.27 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15745175 77 + 24543557 AAAACAAAAAGUUUCCAGGCUGUGGUGCAUGGACUUUUUGAUGCACUUUUCUUGGAAAAUUAUGUUGGACUCAUUUU ..((((.....((((((((....(((((((.((....)).)))))))...))))))))....))))........... ( -21.40, z-score = -2.71, R) >droAna3.scaffold_13337 11882796 69 - 23293914 CAAACAAAAAGAUGCCAAAUG--GCUGCAAGAAUUUCA-AAUGCUCUAAUUUUAGGCAGACCUAAUAGAGUU----- .............(((....)--)).............-...((((((...(((((....))))))))))).----- ( -13.20, z-score = -1.12, R) >droEre2.scaffold_4784 18000849 66 + 25762168 AAAACAAAAAGUUUCCAGGC---GGCGGAUGGACUUUGGAAUGCACUUUUUUCGGAAACUUUUACUUUU-------- ......((((((((((((((---(.((((.....))))...))).))......))))))))))......-------- ( -12.10, z-score = -0.38, R) >droYak2.chr3L 18296887 74 + 24197627 AAAACAAAAAGUUUCCAGGC---GGUGGAUGGACUUUGGAAUGCACUUUAUUCGGAAAAAGAUUGCGGCAUUUUUUU .......((((((((((...---..))))..))))))(((((((.......((.......)).....)))))))... ( -11.70, z-score = 0.82, R) >droSec1.super_0 7855952 72 + 21120651 AAAACAAAAAGUUUCCAGGCCGUGAUGCAUGGACUUUGUGAUGCACUUUUCUUGGAAAAUGUUUGUGGACUC----- ...(((((...((((((((....(.(((((.(......).))))))....))))))))...)))))......----- ( -18.50, z-score = -1.54, R) >droSim1.chr3L 15084960 72 + 22553184 AAAACAAAAAGUUUCCAGGCCGUGGUGCAUGGACUUUGUGAUGCACUUUUCUUGGAAAAUGAUUGCGGACUC----- ....(((....((((((((....(((((((.(......).)))))))...))))))))....))).......----- ( -19.20, z-score = -1.48, R) >consensus AAAACAAAAAGUUUCCAGGC___GGUGCAUGGACUUUGUAAUGCACUUUUCUUGGAAAAUGAUUGUGGACUC_____ ...........((((((((....(((((((..........)))))))...))))))))................... ( -7.63 = -9.27 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:47 2011