| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,743,040 – 15,743,143 |
| Length | 103 |
| Max. P | 0.960372 |
| Location | 15,743,040 – 15,743,143 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.50291 |
| G+C content | 0.41188 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.25 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15743040 103 + 24543557 UUUCGAUGCUCGGCG------GCAAUGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUUA ....(((...(((((------(((((....))))))(((((.....((((....))))...)))))))))..)))((((((((((((......)))))))))))).... ( -32.30, z-score = -2.91, R) >droSim1.chr3L 15082811 103 + 22553184 UUUCGAUGCUCGGCG------GCAAUGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAA ....(((...(((((------(((((....))))))(((((.....((((....))))...)))))))))..)))((((((((((((......)))))))))))).... ( -32.30, z-score = -2.83, R) >droSec1.super_0 7853782 103 + 21120651 UUUCGAUGCUCGGCG------GCAAUGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAA ....(((...(((((------(((((....))))))(((((.....((((....))))...)))))))))..)))((((((((((((......)))))))))))).... ( -32.30, z-score = -2.83, R) >droYak2.chr3L 18294714 103 + 24197627 UUUCCAGGCUCGGCG------GCAGUGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGCUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAA ......(((.(((((------(((..(..((((((..(....)..))))))..)..))))))))..)))......((((((((((((......)))))))))))).... ( -37.30, z-score = -4.32, R) >droEre2.scaffold_4784 17998624 94 + 25762168 ---------UCGGCG------GCAGAGUUUGUUGUCGGUGGUUUUGCAACGUUUGCCGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAA ---------.(((((------((((.(.....((((((..(...........)..)))))).).)))))))))..((((((((((((......)))))))))))).... ( -34.10, z-score = -3.66, R) >droAna3.scaffold_13337 11880643 107 - 23293914 -UGCGAUACUCCGCGACGUCGGCAAUGUUUGUUGUCGUCGGUUUUGCAACGUU-GCUGCUGCCACAGCCAUUGUCAUUUGUUUGCUUUUUAAUAUGCAAAUAAAUAUAA -.(((......)))......(((((((...(((((.(.((((...(((....)-)).))))).))))))))))))((((((((((..........)))))))))).... ( -31.30, z-score = -1.76, R) >dp4.chrXR_group6 13267174 87 - 13314419 -------------------CUGCGAUAC--AUCAGCGGCA-UUAUUUGCCAACCACUGCUGCUGCGGCUGUUAUCAUUUGCUUGCAGUUUAAUAUUCAAACAAAUACAA -------------------....((((.--..((((((((-.....))))......(((....))))))).))))(((((.(((.(((.....)))))).))))).... ( -19.90, z-score = -0.54, R) >droPer1.super_12 1690154 87 - 2414086 -------------------CUGCGAUAC--AUCAGCGGCA-UUAUUUGCCAACCACUGCUGCUGCGGCUGUUAUCAUUUGCUUGCAGUUUAAUAUUCAAACAAAUACAA -------------------....((((.--..((((((((-.....))))......(((....))))))).))))(((((.(((.(((.....)))))).))))).... ( -19.90, z-score = -0.54, R) >consensus _UUCGAUGCUCGGCG______GCAAUGUUUGUUGUCGGUGGUUUUGCAACGUUUGCUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAA .................................(.(((((((..((((.((.....)).)).))..))))))).)((((((((((((......)))))))))))).... (-12.78 = -13.25 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:46 2011