| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,738,343 – 15,738,441 |
| Length | 98 |
| Max. P | 0.830116 |
| Location | 15,738,343 – 15,738,441 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.59136 |
| G+C content | 0.39152 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -10.43 |
| Energy contribution | -9.75 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15738343 98 + 24543557 -------AAAAAAGGCCAACGAACAGCGGGCAAUA--UAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGUGGGUGG-- -------.......(((..(.....)..)))....--.............(((.((...((.(((...(((((((....-.)))))))..))).)).....)).))).-- ( -20.30, z-score = -1.49, R) >droSim1.chr3L 15077571 98 + 22553184 -------AAAAAAGGCCAACGAACAGCGGGCAAUA--UAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGUGGGUGG-- -------.......(((..(.....)..)))....--.............(((.((...((.(((...(((((((....-.)))))))..))).)).....)).))).-- ( -20.30, z-score = -1.49, R) >droSec1.super_0 7849169 98 + 21120651 -------AAAAAAGGCCAACGAACAGCGGGCAAUA--UAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGUCGGUGG-- -------.......(((..(.....)..)))....--.............(((((.((.((.(((...(((((((....-.)))))))..))).)).)).))..))).-- ( -17.50, z-score = -0.34, R) >droYak2.chr3L 18290001 101 + 24197627 ----GCAAAAAAAGGCCAACGAACAGCGGGCAAUA--UAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGUGGGUGG-- ----..........(((..(.....)..)))....--.............(((.((...(..(((...(((((((....-.)))))))..)))..).....)).))).-- ( -19.50, z-score = -0.64, R) >droEre2.scaffold_4784 17994054 98 + 25762168 -------AAAAAAGGCCAACGAACAGUGGGCAAUA--UAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGUGGGCGG-- -------.......(((.((.....((..(((.((--(........)))...)))..))(..(((...(((((((....-.)))))))..)))..)....)).)))..-- ( -19.90, z-score = -1.20, R) >droAna3.scaffold_13337 11875407 99 - 23293914 ------GAAAAGGGAAAAAAAGCCAGCGGGUAAUA--UAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUAUCAUUAGCGGGCGG-- ------...............(((.(((.((..((--(........)))..)).)....((.(((...(((((((....-.)))))))..))).))....)).)))..-- ( -18.90, z-score = -1.13, R) >droWil1.scaffold_180727 1152256 103 - 2741493 -GAAAACUGUUGGUGAAAAAAAAAUGAAAUUAAAA--UCAUAAUAAAUAACUUGCAAACGAGGCGAAAUCGAUGUAAAAACGCGUUGAAGCGUAUCAUUAGUAUAG---- -....((((.((((.........((((........--)))).........((((....))))(((...(((((((......)))))))..))))))).))))....---- ( -16.30, z-score = -1.21, R) >dp4.chrXR_group6 13263554 88 - 13314419 -------------------AAAACUGCGGGAUAUA--CAGCGAUAAAUAACAUGCAAACGAGGCAAAAUCAAUGCAAAG-CGCGUUGAAGCGUAUUAUUAGCGGGAAUGG -------------------....((((..((((((--(.((...........(((.......)))...(((((((....-.))))))).))))).)))).))))...... ( -21.00, z-score = -1.91, R) >droPer1.super_12 1686534 88 - 2414086 -------------------AAAACUGCGGGAUAUA--CAGCGAUAAAUAACAUGCAAACGAGGCAAAAUCAAUGCAAAG-CGCGUUGAAGCGUAUUAUUAGCGGGAAUGG -------------------....((((..((((((--(.((...........(((.......)))...(((((((....-.))))))).))))).)))).))))...... ( -21.00, z-score = -1.91, R) >droVir3.scaffold_13049 2929980 100 - 25233164 --GAAUAAAAAUG--UGGGCGACAUGCAGCAAAA---UAAUAAAAAAUAACGCGUCAACGAGGCGAAAUCAAUGUAAAA-CGCGUUGAAGCGUGUCAUUAGUG--UGUGG --...........--.....(((((((.......---.............(((.((...)).)))...(((((((....-.))))))).))))))).......--..... ( -23.30, z-score = -1.22, R) >droMoj3.scaffold_6680 7847932 107 - 24764193 GUAUAUAAAUAUGAGUACGAGACUGGCUGCAUAAAAAUAAUAAUAAAUAACUCGUCAACGAGGCGAAAUCAAUGUAAAA-CGCGUCGAAGCGUAUCAUUAGUG--UGUGG .((((((...((((.((((.(((((..(((((..................((((....))))..(....).)))))...-)).)))....))))))))...))--)))). ( -20.90, z-score = -0.58, R) >droGri2.scaffold_15121 273234 100 - 279557 ---AUUUAAGAU---UGGGAGACAUGCAGCAUAA---UAAUAAUAAAUAACGCGUCAGCGAGGCGAAAUCAAUAUUAAA-CGCAUUGAAGCGUGUCAUUACUGAAUGUGG ---........(---..(..(((((((.......---.............(((.((...)).)))...(((((......-...))))).)))))))....)..)...... ( -18.50, z-score = -0.01, R) >consensus _______AAAAAAGGCCAAAGAACAGCGGGAAAUA__UAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAA_CGCGUUGAAGCGUAUCAUUAGUGGGUGG__ ....................................................(((.((.((.(((...(((((((......)))))))..))).)).)).)))....... (-10.43 = -9.75 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:45 2011