| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,736,376 – 15,736,491 |
| Length | 115 |
| Max. P | 0.579766 |
| Location | 15,736,376 – 15,736,491 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Shannon entropy | 0.32774 |
| G+C content | 0.32063 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -14.51 |
| Energy contribution | -15.58 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15736376 115 - 24543557 UACCUUUUUGCACUCACCUAAGCCAUUCAACUACUUUAAGGCCACACGGACAAAGUCAUUUUAUGUGAAUGCCUUAGAAUACUUUUGUGAGUGUUU-AGAGCACUUAAAAAAAUAU ...((((..((((((((..(((..((((........((((((((((..((.........))..))))...)))))))))).)))..))))))))..-))))............... ( -27.30, z-score = -2.98, R) >droYak2.chr3L 18288038 112 - 24197627 AACCUUCAUAAAUUCACAUAAAUCAUUUCACUUCUUUAAGUUCAGCAAAAAAAUUUCAUUUUAUGUGAAUGUUUUAGAUUACAUUUGUGAGAGUUUCGGAGUACCUAACAUG---- ...((((..((((((.(((((((....((((((....))))........((((((((((.....))))).))))).))....))))))).)))))).))))...........---- ( -15.60, z-score = -0.28, R) >droSec1.super_0 7847260 111 - 21120651 UACCUUUAAGC---CAUAUAAGCCAUUUAACUACUUUAAGGCCACACGGACAAAGUCAUUUUAUGUGAAUGCCUUGGAAUACUUUUGUGAGUGUUU-AGAGCACUUAAAAAAUAA- ....((((((.---((((((((((...............)))......(((...)))...)))))))..(((.((.((((((((....))))))))-.)))))))))))......- ( -19.86, z-score = -0.41, R) >droSim1.chr3L 15075620 114 - 22553184 UACCUUUAUGCACUCAUAUAAGCCAUUUAACUACUUUAAGGCCACAUGGACAAAGUCAUUUUAUGUGAAUGCCUUGGAAUACUUUUGUGAGUGUUU-AGAGCACUUAAAAAAUAA- ...(((((.(((((((((.(((.........((.((((((((((((((((.........))))))))...)))))))).))))).))))))))).)-))))..............- ( -29.30, z-score = -3.18, R) >consensus UACCUUUAUGCACUCACAUAAGCCAUUUAACUACUUUAAGGCCACACGGACAAAGUCAUUUUAUGUGAAUGCCUUAGAAUACUUUUGUGAGUGUUU_AGAGCACUUAAAAAAUAA_ ...((((..(((((((((.(((.........((.((((((((((((.(((.........))).))))...)))))))).))))).)))))))))...))))............... (-14.51 = -15.58 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:45 2011