| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,394,209 – 5,394,299 |
| Length | 90 |
| Max. P | 0.529464 |
| Location | 5,394,209 – 5,394,299 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.50 |
| Shannon entropy | 0.51088 |
| G+C content | 0.38474 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -9.31 |
| Energy contribution | -9.35 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5394209 90 - 23011544 ------------GCCAAAGUCC----UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCUUCAGCUUUUC---UUUCGUUGAUACCC---- ------------..........----((((...(((((((.((....)).))))))).))))....-...........--.....(((((.....---....))))).....---- ( -13.10, z-score = -0.79, R) >droSim1.chr2L 5185749 90 - 22036055 ------------GUCAAAGUCC----UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCUUCAGCUUUUC---CUUCGUUGAUACCC---- ------------..........----((((...(((((((.((....)).))))))).))))....-...........--.....(((((.....---....))))).....---- ( -13.10, z-score = -0.90, R) >droSec1.super_5 3469329 84 - 5866729 ------------GCCAAAGUCC----UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCUUGAGCUUUUC---UUUCGUUG---------- ------------((.((((...----((((...(((((((.((....)).))))))).))))....-......(((((--......)))))...)---))).))..---------- ( -12.90, z-score = -0.57, R) >droYak2.chr2L 8519809 91 + 22324452 ------------CCCAAAGUCC---AGGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCUUCAUCUUUUC---UUUCGUUGAUACCC---- ------------...((((...---(((((......((((.((....)).))))((((....))))-...........--.)))))...))))..---..............---- ( -11.10, z-score = 0.07, R) >droEre2.scaffold_4929 5476111 94 - 26641161 ------------CCCAAAGUCCUGGAUGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCCUCAGCUUUUC---UUUCGUUGAUACCC---- ------------.(((......)))(((((...(((((((.((....)).))))))).)))))...-...........--.....(((((.....---....))))).....---- ( -15.80, z-score = -0.85, R) >droAna3.scaffold_12916 6418375 95 + 16180835 ------------AUCCAAGUCCU--UUGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUCCUUCAUCUUUUCUCUUCUCGUUGAUAUCG---- ------------...(((((((.--..))))..(((((((.((....)).))))))).........-...........--.......................)))......---- ( -10.40, z-score = -0.48, R) >droPer1.super_5 6285355 94 + 6813705 ------------AUCCAUGUCC----UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUU--UUUUUUUCCCUCAUC---UCCGUUUGAUACUCGUAC ------------..........----((((...(((((((.((....)).))))))).))))..((-(((...((...--..............)---)...)))))......... ( -11.03, z-score = -0.38, R) >dp4.chr4_group1 4689440 93 - 5278887 ------------AUCCAUGUCC----UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAG-UU--UUUUUUUCCCUCAUC---UCCGUUUGAUACUCGUAC ------------..........----((((...(((((((.((....)).))))))).))))..((-(((...((-..--..............)---)...)))))......... ( -11.09, z-score = -0.37, R) >droWil1.scaffold_180708 12045840 107 + 12563649 UUCCAAGUCCAAGGCGGUGUCC---UUUGCCAUUUUGUGCUCAAAAUUGCGUAUAAAAUCCAUUUCAAAAAUUACUUUUAUUCUUUUGCUUCAUAACUAUUUAUGUGUUU------ ....((((....(((((.....---.)))))(((((((((.((....)).)))))))))..............))))..........((..(((((....))))).))..------ ( -14.00, z-score = -0.40, R) >droGri2.scaffold_15252 5828682 98 + 17193109 -----------------AGUCCGAGGCUGGCAAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC-AAAAUUAGUUUUAUUCUUUUAGCUCCUUUGCUAAAGCAAGCUGCUUUUC -----------------.....(((((.(((..(((((((.((....)).))))))).........-................(((((((......)))))))...)))))))).. ( -20.50, z-score = -0.55, R) >consensus ____________GCCAAAGUCC____UGGACCAUUUGUGCUCAAAACUGCGUACGAAAUCCAUUUC_AAAAUUAGUUU__UUCCUUCAGCUUUUC___UUUCGUUGAUACCC____ ..................((((.....))))..(((((((.((....)).)))))))........................................................... ( -9.31 = -9.35 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:49 2011