| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,724,072 – 15,724,183 |
| Length | 111 |
| Max. P | 0.559893 |
| Location | 15,724,072 – 15,724,183 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.41 |
| Shannon entropy | 0.47595 |
| G+C content | 0.42044 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.44 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15724072 111 + 24543557 UGUUGGCGCCCGUGAGGGUGUGUGGAUGU-GUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUAGUAGUUUAGACGUCGAAACCUCCCGCAAAAAGACGCUUUUUCAC ....(((((((....)))((((.(((.((-...((((..((((((((......))))))))...(((.........)))))))..)).)))))))......))))....... ( -32.10, z-score = -2.14, R) >droEre2.scaffold_4784 17980007 111 + 25762168 UGUUGGUGCCCGUGAGGGAGUGUGCGUGU-GUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUAGUAGUUUAGACGUCGAAACCGCCCGCAAAAAGACGCUUUUUCAC ....(((((((....))).(((.(((.((-...((((..((((((((......))))))))...(((.........)))))))..))))).))).......))))....... ( -30.70, z-score = -1.61, R) >droAna3.scaffold_13337 11862689 98 - 23293914 ------------AGCUGCUAGCUAGGGGG-GUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUGGUAGUUUAGACGUCGAAAA-AUCCGCUAAAAGAUGCUUUCACAG ------------(((((((((((((((.(-......)....((((((......))))))))))))))))))))).....((.((((.-(((........)))..)))))).. ( -23.50, z-score = -0.89, R) >dp4.chrXR_group6 13253461 112 - 13314419 CGCAUCUGUGUGUGUCGGUGCAUGGAAGGAGUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUAGCAGUUUAGACGGGAAAAACCGCAUGAAAGAUGCGUCUUUUGAC .((((((...((((.((((.(.((...(((.((((((..((((((((......))))))))...)))).)).)))...)).)....))))))))..))))))(((....))) ( -32.50, z-score = -2.39, R) >droPer1.super_12 1676306 112 - 2414086 CGCAUCUUUGUGUGUCGGUGCAUGGAAGGAGUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUAGCAGUUUAGACGGGAAAAACCGCAUGAAAGAUGCGUCUUUUGAC .((((((((.((((.((((.(.((...(((.((((((..((((((((......))))))))...)))).)).)))...)).)....))))))))))))))))(((....))) ( -33.30, z-score = -2.82, R) >consensus CGCAGCUGCCCGUGACGGUGCAUGGAAGG_GUGUGACAUAGUGACAUAAUAAAAUGUUACUUUAGUUAGUAGUUUAGACGUCGAAAACCCCCGCAAAAAGACGCUUUUUCAC ................(((((((..........((((..((((((((......))))))))...))))...((....))...................)))))))....... (-11.80 = -11.44 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:41 2011