| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,723,587 – 15,723,672 |
| Length | 85 |
| Max. P | 0.834603 |
| Location | 15,723,587 – 15,723,672 |
|---|---|
| Length | 85 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 67.51 |
| Shannon entropy | 0.61909 |
| G+C content | 0.39625 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -6.73 |
| Energy contribution | -10.04 |
| Covariance contribution | 3.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15723587 85 + 24543557 ---GCCUGUCUCU-------GCGUGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCUGUCUUUCAGACAGGAGUCACAAGGAC---UACUAUG ---....((((((-------(.(.(((((......)))))).))))...((((((...(((((((.....))))))).)))))).)))---....... ( -23.90, z-score = -3.01, R) >droAna3.scaffold_13337 11862223 82 - 23293914 ---GCAGGUCUCUCAGACAGGCAGGAUUUUAAUAAUAUUCCUUACGAAAUAUUCAG----CUAUCCUAAGGAAAGGACACACACUCAAC--------- ---((..(((.....)))..))...............(((((((.((.........----...)).)))))))................--------- ( -12.90, z-score = -0.93, R) >droEre2.scaffold_4784 17979551 85 + 25762168 ---GCCUGUCCCU-------GGGAGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCUGUCUUUCAGACAGGAGUCGCAAGGAC---UCCUAUG ---....((((((-------(((.(((((......))))))))))....((((((...(((((((.....))))))).))))))))))---....... ( -28.90, z-score = -3.79, R) >droYak2.chr3L 18274511 88 + 24197627 ---GCCCGUCUCU-------GCGAGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCUGUCUUUCAGACAGGAGUCGCAAGGACGACUCCUAUG ---...(((((((-------(.(.(((((......)))))).))))...((((((...(((((((.....))))))).)))))).))))......... ( -26.10, z-score = -3.04, R) >droSec1.super_0 7834654 85 + 21120651 ---GCCUGUCUCU-------GCGAGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCCGUCUUUCAGACAGGAGUCACAAGGAC---UCCUAUG ---....((((((-------(.(.(((((......)))))).))))......((((..........)))))))(((((((.....)))---))))... ( -19.80, z-score = -1.42, R) >droSim1.chr3L 15062526 85 + 22553184 ---GCCUGUCUCU-------GCGAGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCCGUCUUUCAGACAGGAGUCACAAGGAC---UCCUAUG ---....((((((-------(.(.(((((......)))))).))))......((((..........)))))))(((((((.....)))---))))... ( -19.80, z-score = -1.42, R) >droGri2.scaffold_15110 21222195 91 + 24565398 UGUGCACGUUUUU------AAUAUAUAUUUUCUAAGAAAAUAUGAAAGCUGUCAGUGCUUAUGAAGCCCAGGCAGCAUUCAUGC-CAUGUAUUCCAUG ...(((.......------.....((((((((...))))))))(((.((((((.(.(((.....))).).)))))).))).)))-((((.....)))) ( -20.40, z-score = -1.26, R) >consensus ___GCCUGUCUCU_______GCGAGAUUUUAAUAUGAAUCCUUAGAAAAUUGUGAAUAUUCUGUCUUUCAGACAGGAGUCACAAGGAC___UCCUAUG .......((((.............(((((......))))).........((((((...(((((((.....))))))).)))))))))).......... ( -6.73 = -10.04 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:40 2011