Locus 7585

Sequence ID dm3.chr3L
Location 15,716,619 – 15,716,692
Length 73
Max. P 0.992979
window10440 window10441

overview

Window 0

Location 15,716,619 – 15,716,692
Length 73
Sequences 7
Columns 76
Reading direction forward
Mean pairwise identity 71.57
Shannon entropy 0.58768
G+C content 0.41132
Mean single sequence MFE -18.69
Consensus MFE -9.36
Energy contribution -11.91
Covariance contribution 2.56
Combinations/Pair 1.14
Mean z-score -2.17
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.58
SVM RNA-class probability 0.992979
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15716619 73 + 24543557
---AAUGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCUGUCAUUACUUUGUUUGUCCAUGUCAAAGGACAUU
---..((((.....))))....((((.((((((..((((...))))..))))))..)))).(((((....))))). ( -22.20, z-score =  -2.97, R)
>droEre2.scaffold_4784 17972708 73 + 25762168
---AGUGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCUAUCAUUACUUUGUUUGGCCAUGUCAAAGGACAUU
---..((((.....))))....(((..((((((..(((.....)))..))))))....)))(((((....))))). ( -22.40, z-score =  -2.70, R)
>droYak2.chr3L 18267500 76 + 24197627
AGUAGGGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCCGUCAUUACUUUGUUUGUCCAUGUCAAAGGACAUU
.....((((....)))).....((((.((((((..((((...))))..))))))..)))).(((((....))))). ( -22.30, z-score =  -2.33, R)
>droSec1.super_0 7827698 73 + 21120651
---AGUGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCUGUCAUUACUUUGUUUGUCCAUGUCAAAGGACAUU
---..((((.....))))....((((.((((((..((((...))))..))))))..)))).(((((....))))). ( -22.10, z-score =  -2.68, R)
>droSim1.chr3L 15055606 73 + 22553184
---AAUGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCUGUCAUUACUUUGUUUGUCCAUGUCAAAGGACAUU
---..((((.....))))....((((.((((((..((((...))))..))))))..)))).(((((....))))). ( -22.20, z-score =  -2.97, R)
>droAna3.scaffold_13337 11855448 56 - 23293914
---AUAGAGUUCUCCCCAAUCAGGCAUCA-----------------UUACAUUGUUUGCCCCUGUCAAAGGACAUU
---.....(((((.........((((.((-----------------......))..))))........)))))... (  -9.33, z-score =  -0.72, R)
>droWil1.scaffold_180727 1122631 55 - 2741493
------------------ACUAAAAACUUUUGUCUUGUCUGCGACAAUUGUUUGCUU---CAAGUCCGACGAGAAC
------------------..............(((((((.(.(((..(((.......---)))))))))))))).. ( -10.30, z-score =  -0.82, R)
>consensus
___AGUGGGUGCUUCCCAAUCAGGCAUCAAAGUUUUGACUCUGUCAUUACUUUGUUUGUCCAUGUCAAAGGACAUU
......(((.....))).....((((.((((((..((((...))))..))))))..)))).(((((....))))). ( -9.36 = -11.91 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 15,716,619 – 15,716,692
Length 73
Sequences 7
Columns 76
Reading direction reverse
Mean pairwise identity 71.57
Shannon entropy 0.58768
G+C content 0.41132
Mean single sequence MFE -16.19
Consensus MFE -8.81
Energy contribution -10.71
Covariance contribution 1.91
Combinations/Pair 1.22
Mean z-score -1.43
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.54
SVM RNA-class probability 0.948534
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15716619 73 - 24543557
AAUGUCCUUUGACAUGGACAAACAAAGUAAUGACAGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCAUU---
..(((((........)))))..((((((..((((...))))..)))))).........((((.....))))..--- ( -19.50, z-score =  -2.40, R)
>droEre2.scaffold_4784 17972708 73 - 25762168
AAUGUCCUUUGACAUGGCCAAACAAAGUAAUGAUAGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCACU---
.(((((....)))))(((....((((((..((((...))))..))))))..)))....((((.....))))..--- ( -17.90, z-score =  -1.77, R)
>droYak2.chr3L 18267500 76 - 24197627
AAUGUCCUUUGACAUGGACAAACAAAGUAAUGACGGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCCCUACU
..(((((........)))))..((((((..((((...))))..))))))..........(((......)))..... ( -18.50, z-score =  -1.76, R)
>droSec1.super_0 7827698 73 - 21120651
AAUGUCCUUUGACAUGGACAAACAAAGUAAUGACAGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCACU---
..(((((........)))))..((((((..((((...))))..)))))).........((((.....))))..--- ( -19.40, z-score =  -2.33, R)
>droSim1.chr3L 15055606 73 - 22553184
AAUGUCCUUUGACAUGGACAAACAAAGUAAUGACAGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCAUU---
..(((((........)))))..((((((..((((...))))..)))))).........((((.....))))..--- ( -19.50, z-score =  -2.40, R)
>droAna3.scaffold_13337 11855448 56 + 23293914
AAUGUCCUUUGACAGGGGCAAACAAUGUAA-----------------UGAUGCCUGAUUGGGGAGAACUCUAU---
..(.(((((...((((.(((..........-----------------)).).))))...))))).).......--- ( -10.40, z-score =   0.15, R)
>droWil1.scaffold_180727 1122631 55 + 2741493
GUUCUCGUCGGACUUG---AAGCAAACAAUUGUCGCAGACAAGACAAAAGUUUUUAGU------------------
((((.....))))...---....((((..(((((........)))))..)))).....------------------ (  -8.10, z-score =   0.48, R)
>consensus
AAUGUCCUUUGACAUGGACAAACAAAGUAAUGACAGAGUCAAAACUUUGAUGCCUGAUUGGGAAGCACCCACU___
..(((((........)))))..((((((..((((...))))..))))))..........(((.....)))...... ( -8.81 = -10.71 +   1.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:40 2011