Locus 7584

Sequence ID dm3.chr3L
Location 15,712,606 – 15,712,695
Length 89
Max. P 0.999553
window10438 window10439

overview

Window 8

Location 15,712,606 – 15,712,695
Length 89
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 75.35
Shannon entropy 0.38640
G+C content 0.48607
Mean single sequence MFE -38.28
Consensus MFE -29.76
Energy contribution -30.04
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -3.96
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.01
SVM RNA-class probability 0.999553
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15712606 89 + 24543557
UAGAUAUUGGUGAUGCCGAAGGAAAAUCGGCAGCUGGUUUUGGUGAUCCAAACGUCGAUUUUCCUCCAGCAGACUACCAGCCAAAGUCA---------------------------
..(((.(((((..(((.(.((((((((((((...(((.((....)).)))...)))))))))))).).)))........))))).))).--------------------------- ( -30.70, z-score =  -3.14, R)
>droEre2.scaffold_4784 17968797 116 + 25762168
UAGAUGCUGGUAAUGCCGCAGGAAAAUCGGCCGCUGGCUUUGGUGAUCCAACCGUCAAUUUUCCUCCGGCAGACCACCAGCCAAAUGCUGAUCCCUCCUGGCAAAUCCAUUCGUCA
..((((.(((...((((..((((..((((((...(((((..((((.((...(((............)))..)).)))))))))...))))))...))))))))...)))..)))). ( -39.00, z-score =  -2.16, R)
>droYak2.chr3L 18263309 116 + 24197627
UAGAUGCUGGUAAUGGCGAAGGAAAAUCGGCCGCUGGCUUUGGUGAUCCAACCGUCGAUUUUCCUUCGGCAGACUACCAGCCAAUCGAUGAUCCUUCAUGGAAAAUCCAUUCGUCA
..((((((((((.((.(((((((((((((((.(.(((.((....)).))).).))))))))))))))).))...)))))))..)))(((((......((((.....))))))))). ( -50.30, z-score =  -5.24, R)
>droSec1.super_0 7823685 89 + 21120651
UAGAUGUUGGUGAUGCCGUAGGAAAAUCGGCAGCUGGUUUUGGUGAUCCAAAUGUCGAUUUUCCUCUAGCAGACUACCAGCCAAAGUCA---------------------------
..((((((((((.(((...(((((((((((((..(((.((....)).)))..)))))))))))))...)))...)))))))....))).--------------------------- ( -35.10, z-score =  -4.46, R)
>droSim1.chr3L 15051593 89 + 22553184
UAGAUGUUGGUGAUGCCGUAGGAAAAUCGGCAGCUGGUUUUGGUGAUCCAAAUGUCGAUUUUCCUCCAGCAGACUACCAGCCAAAGUCA---------------------------
..((((((((((.(((.(.(((((((((((((..(((.((....)).)))..))))))))))))).).)))...)))))))....))).--------------------------- ( -36.30, z-score =  -4.77, R)
>consensus
UAGAUGUUGGUGAUGCCGAAGGAAAAUCGGCAGCUGGUUUUGGUGAUCCAAACGUCGAUUUUCCUCCAGCAGACUACCAGCCAAAGUCA___________________________
.....(((((((.(((.(.((((((((((((...(((.((....)).)))...)))))))))))).).)))...)))))))................................... (-29.76 = -30.04 +   0.28)

alignment

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secondary structure

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dotplot

Postscript

Window 9

Location 15,712,606 – 15,712,695
Length 89
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 75.35
Shannon entropy 0.38640
G+C content 0.48607
Mean single sequence MFE -37.74
Consensus MFE -26.44
Energy contribution -26.60
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -3.81
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.95
SVM RNA-class probability 0.999501
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15712606 89 - 24543557
---------------------------UGACUUUGGCUGGUAGUCUGCUGGAGGAAAAUCGACGUUUGGAUCACCAAAACCAGCUGCCGAUUUUCCUUCGGCAUCACCAAUAUCUA
---------------------------.((..((((.(((.....((((((((((((((((.((.((((..........)))).)).)))))))))))))))))))))))..)).. ( -33.60, z-score =  -4.31, R)
>droEre2.scaffold_4784 17968797 116 - 25762168
UGACGAAUGGAUUUGCCAGGAGGGAUCAGCAUUUGGCUGGUGGUCUGCCGGAGGAAAAUUGACGGUUGGAUCACCAAAGCCAGCGGCCGAUUUUCCUGCGGCAUUACCAGCAUCUA
...((((((((((..((....))))))..))))))((((((((..(((((.((((((((((.(.(((((..........))))).).)))))))))).)))))))))))))..... ( -49.80, z-score =  -3.51, R)
>droYak2.chr3L 18263309 116 - 24197627
UGACGAAUGGAUUUUCCAUGAAGGAUCAUCGAUUGGCUGGUAGUCUGCCGAAGGAAAAUCGACGGUUGGAUCACCAAAGCCAGCGGCCGAUUUUCCUUCGCCAUUACCAGCAUCUA
.....(((.(((..(((.....)))..))).))).(((((((((..((.((((((((((((.(.(((((..........))))).).)))))))))))))).)))))))))..... ( -48.10, z-score =  -4.58, R)
>droSec1.super_0 7823685 89 - 21120651
---------------------------UGACUUUGGCUGGUAGUCUGCUAGAGGAAAAUCGACAUUUGGAUCACCAAAACCAGCUGCCGAUUUUCCUACGGCAUCACCAACAUCUA
---------------------------.((..((((.(((.....((((..((((((((((.((.((((..........)))).)).))))))))))..)))))))))))..)).. ( -27.60, z-score =  -3.21, R)
>droSim1.chr3L 15051593 89 - 22553184
---------------------------UGACUUUGGCUGGUAGUCUGCUGGAGGAAAAUCGACAUUUGGAUCACCAAAACCAGCUGCCGAUUUUCCUACGGCAUCACCAACAUCUA
---------------------------.((..((((.(((.....(((((.((((((((((.((.((((..........)))).)).)))))))))).))))))))))))..)).. ( -29.60, z-score =  -3.44, R)
>consensus
___________________________UGACUUUGGCUGGUAGUCUGCUGGAGGAAAAUCGACGUUUGGAUCACCAAAACCAGCUGCCGAUUUUCCUACGGCAUCACCAACAUCUA
...................................(.((((....(((((.((((((((((.((.((((..........)))).)).)))))))))).)))))..)))).)..... (-26.44 = -26.60 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:38 2011