Locus 7582

Sequence ID dm3.chr3L
Location 15,706,769 – 15,706,865
Length 96
Max. P 0.871274
window10435

overview

Window 5

Location 15,706,769 – 15,706,865
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 86.17
Shannon entropy 0.22434
G+C content 0.50887
Mean single sequence MFE -31.30
Consensus MFE -23.41
Energy contribution -23.35
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -2.16
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.00
SVM RNA-class probability 0.871274
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15706769 96 - 24543557
GACUUCCUUUCCAGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUACAUAUAUAUGUAUGUGGAGCGACGGGAAGGACCACCGGCUAGCUGCAA
....((((((((.((((...(((....)))..((((((((((((((....))))))))))))))...))))))))))))......((.....)).. ( -33.60, z-score =  -2.87, R)
>droSim1.chr3L 15045832 92 - 22553184
GACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUAC----AUAUGUAUGUGGAGCGAGGAGAAGGACCACCGGCUAGCUGCAA
....(((((..((.(((...(((....)))..(((((((((((......----)))))))))))...)))))..)))))......((.....)).. ( -26.10, z-score =  -0.83, R)
>droSec1.super_0 7817909 92 - 21120651
GACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUGUGUAC----AUAUGUAUGUGGAGCGAGGAGAAGGACCACCGGCUAGCUGCAA
....(((((..((.(((...(((....)))..((((((((((((....)----)))))))))))...)))))..)))))......((.....)).. ( -29.60, z-score =  -1.64, R)
>droEre2.scaffold_4784 17963208 88 - 25762168
GACUUCCUCCUCGCUCGAAGUCUGGCCAGAUACCAAUACGUACUU--------AUAUGUAUAGGGAGCGAGGCGGAGGACCACCGGCUAGCUGCAA
..(((((.((((((((...((((....)))).((.(((((((...--------.))))))).)))))))))).))))).......((.....)).. ( -35.90, z-score =  -3.32, R)
>consensus
GACUUCCUUUCCCGUCGAAGUCUGGCCAGAAACAUAUACGUGUAUGUAC____AUAUGUAUGUGGAGCGAGGAGAAGGACCACCGGCUAGCUGCAA
((((((..........))))))(((((.(...(((((((((((..........)))))))))))...)........((....)))))))....... (-23.41 = -23.35 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:35 2011