| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,698,972 – 15,699,027 |
| Length | 55 |
| Max. P | 0.500000 |
| Location | 15,698,972 – 15,699,027 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 66.61 |
| Shannon entropy | 0.58495 |
| G+C content | 0.40509 |
| Mean single sequence MFE | -12.38 |
| Consensus MFE | -4.51 |
| Energy contribution | -5.43 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 15698972 55 + 24543557 AAAUCCGGCAUAGCGAAUGGAAUUCUUUCAUUUAAUUCUAUGGACUGCUGGGCGG---- ...(((((((...(..((((((((.........)))))))).)..)))))))...---- ( -13.70, z-score = -1.60, R) >droYak2.chr3L 18249532 55 + 24197627 AAAUCCGGCAGGGCGAGUGGAAUUCUUUCAUUUAAUUCUACCGACUGCUGGGCUG---- ...((((((((..((.((((((((.........)))))))))).))))))))...---- ( -21.90, z-score = -3.90, R) >droSec1.super_0 7810176 55 + 21120651 AAAUCCGGCAUAGCGAAUGGAAUUCUUUCAUUUAAUUGUAUGGACUGCUGGGCUG---- ...(((((((....(((((((.....)))))))....((....)))))))))...---- ( -11.50, z-score = -0.77, R) >droSim1.chr3L 15038104 55 + 22553184 AAAUCCGGCAUAUCGAAUGGAAUUCUUUCAUUUAAUUGUAUGGACUGCUGGGCUG---- ...(((((((....(((((((.....)))))))....((....)))))))))...---- ( -11.50, z-score = -1.13, R) >droGri2.scaffold_15110 21196392 50 + 24565398 ---------AAAGUGUUAAUAGUUUUCAUAUCCAGUUUCUUUUAGUAGUCUUGUGAAAG ---------..............(((((((...((...((......)).))))))))). ( -3.30, z-score = -0.45, R) >consensus AAAUCCGGCAUAGCGAAUGGAAUUCUUUCAUUUAAUUCUAUGGACUGCUGGGCUG____ ...(((((((....((((((((...))))))))............)))))))....... ( -4.51 = -5.43 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:34 2011